Gene omics information

Query gene ID At4g11670
Gene name -
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At4g11670826772-F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;POMFS.X.H.G.
0.5469.5At1g11060837647unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MBPOFS.X.H.G.
0.5065.3At2g40770818674ATP binding / DNA binding / helicase/ nucleic acid binding / protein binding / zinc ion bindingF:in 6 functions;P:unknown;C:unknown;MFBOPVAS.X.H.G.
0.5065.3At5g23110832375zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding, ATP binding;P:unknown;C:unknown;MPOFVBS.X.H.G.
0.4963.5At5g19660832086S1P (SITE-1 PROTEASE)S1P appears to function as a Golgi-localized subtilase and to help protect seedlings against salt and osmotic stress. The roots of s1p-3 mutants are hypersensitive to NaCl, KCl, LiCl, and mannitol. Several salt-stress responsive genes show weaker induction in an s1P-3 mutant background. The proteolytic cleavage of the bZIP17 transcription factor depends on S1P in vitro. And there is evidence that S1P can cleave bZIP17 in vitro.S.X.H.G.
0.4862.5At5g55390835632EDM2Encodes EDM2 (enhanced downy mildew 2). The predicted protein bears typical features of transcriptional regulators. EDM2 contains two putative bipartite nuclear localization signals (NLS) two zinc-finger-like motifs, a Proline-rich region and a large aspartic acid-rich region. Both zinc-finger-like stretches resemble the PHD (plant homeodomain) finger motif. Mutations in EDM2 comprise RPP7 mediated resistance against Hyaloperonospora parasitica isolate Hiks1 (HpHiks1). EDM2 may function as a direct or indirect regulator of RPP7 expression.S.X.H.G.
0.4761.2At5g23150832379HUA2 (ENHANCER OF AG-4 2)Putative transcription factor. Member of the floral homeotic AGAMOUS pathway.Mutations in HUA enhance the phenotype of mild ag-4 allele. Single hua mutants are early flowering and have reduced levels of FLC mRNA. Other MADS box flowering time genes such as FLM and MAF2 also appear to be regulated by HUA2. HUA2 normally activates FLC expression and enhances AG function.S.X.H.G.
0.4355.3At5g63200836441tetratricopeptide repeat (TPR)-containing proteinF:binding;P:biological_process unknown;C:cellular_component unknown;OBMAFPS.X.H.G.
0.4355.3At1g76950844030PRAF1F:chromatin binding, zinc ion binding, Ran GTPase binding;P:biological_process unknown;C:cellular_component unknown;MOPBFAVS.X.H.G.
0.4253.9At1g55325841978-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MBPOFS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
58.899.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
50.899.8GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
35.899.7GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
27.199.7GSM133773Lindsey_1-25_torpedo-meristem_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
20.799.6GSM142642MC002_ATH1_A7.2-dubos-wLhGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
18.799.5GSM142623MC002_ATH1_A1.1-dubos-wtxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
18.299.5GSM142646MC002_ATH1_A8.3-dubos-aihGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
17.299.5GSM142629MC002_ATH1_A3.1-dubos-6kxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
17.099.5GSM142643MC002_ATH1_A7.3-dubos-wLhGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
16.299.5GSM128662Underwood_1-15_Cor-5x10e7-10h_Rep3_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
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Homologous genes



Paralogous genes



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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.014e-138At3g22180821782zinc finger (DHHC type) family proteinF:zinc ion binding;P:biological_process unknown;C:plasma membrane;MOFPC.G.S.X.
0.014e-138At3g50760824240GATL2 (Galacturonosyltransferase-like 2)Encodes a protein with putative galacturonosyltransferase activity.C.G.S.X.
0.014e-138At1g73960843733TAF2 (TBP-ASSOCIATED FACTOR 2)F:metallopeptidase activity, zinc ion binding;P:unknown;C:cellular_component unknown;MOBFPAVC.G.S.X.
0.014e-138At1g27180839607disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAVC.G.S.X.
0.014e-138At1g27170839606ATP binding / protein binding / transmembrane receptorF:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:chloroplast;PMBOFAVC.G.S.X.
0.012e+036At5g44500834477small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putativeF:molecular_function unknown;P:unknown;C:nucleolus, small nucleolar ribonucleoprotein complex, nucleus;MPFBOVAC.G.S.X.
0.012e+036At3g59780825147-F:molecular_function unknown;P:biological_process unknown;C:nucleus, chloroplast;OBMFPVC.G.S.X.
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Orthologous genes



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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.012e+036Glycine maxGma.7603.1.S1_atBU548978--3e-11At3g14410transporter-relatedC.G.S.X.
0.015e-240Hordeum vulgareContig6461_s_atContig6461--7e-17At1g52360coatomer protein complex, subunit beta 2 (beta prime), putativeC.G.S.X.
0.013e+036Oryza sativaOs06g0552300AK101229.1-Plant protein of unknown function DUF822 familyprotein5e-8At1g78700brassinosteroid signalling positive regulator-relatedC.G.S.X.
0.031e-450Populus trichocarpaPtpAffx.200443.1.S1_atpmrna894hypothetical protein-1e-4At4g11670-C.G.S.X.
0.014e-138Triticum aestivumTaAffx.86307.1.S1_atCA611540--1e-3At4g21390B120C.G.S.X.
0.014e-136Vitis vinifera1615208_atCF603150hypothetical protein LOC100255070-3e-19At5g22850aspartyl protease family proteinC.G.S.X.
0.013e+034Zea maysZm.9583.1.A1_atCB351275--1e+0At4g1317060S ribosomal protein L13A (RPL13aC)C.G.S.X.
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Biological processes



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ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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