CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g11670

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g11670 826772 - F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;POMF S.X. H.G.
0.54 69.5 At1g11060 837647 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MBPOF S.X. H.G.
0.50 65.3 At2g40770 818674 ATP binding / DNA binding / helicase/ nucleic acid binding / protein binding / zinc ion binding F:in 6 functions;P:unknown;C:unknown;MFBOPVA S.X. H.G.
0.50 65.3 At5g23110 832375 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding, ATP binding;P:unknown;C:unknown;MPOFVB S.X. H.G.
0.49 63.5 At5g19660 832086 S1P (SITE-1 PROTEASE) S1P appears to function as a Golgi-localized subtilase and to help protect seedlings against salt and osmotic stress. The roots of s1p-3 mutants are hypersensitive to NaCl, KCl, LiCl, and mannitol. Several salt-stress responsive genes show weaker induction in an s1P-3 mutant background. The proteolytic cleavage of the bZIP17 transcription factor depends on S1P in vitro. And there is evidence that S1P can cleave bZIP17 in vitro. S.X. H.G.
0.48 62.5 At5g55390 835632 EDM2 Encodes EDM2 (enhanced downy mildew 2). The predicted protein bears typical features of transcriptional regulators. EDM2 contains two putative bipartite nuclear localization signals (NLS) two zinc-finger-like motifs, a Proline-rich region and a large aspartic acid-rich region. Both zinc-finger-like stretches resemble the PHD (plant homeodomain) finger motif. Mutations in EDM2 comprise RPP7 mediated resistance against Hyaloperonospora parasitica isolate Hiks1 (HpHiks1). EDM2 may function as a direct or indirect regulator of RPP7 expression. S.X. H.G.
0.47 61.2 At5g23150 832379 HUA2 (ENHANCER OF AG-4 2) Putative transcription factor. Member of the floral homeotic AGAMOUS pathway.Mutations in HUA enhance the phenotype of mild ag-4 allele. Single hua mutants are early flowering and have reduced levels of FLC mRNA. Other MADS box flowering time genes such as FLM and MAF2 also appear to be regulated by HUA2. HUA2 normally activates FLC expression and enhances AG function. S.X. H.G.
0.43 55.3 At5g63200 836441 tetratricopeptide repeat (TPR)-containing protein F:binding;P:biological_process unknown;C:cellular_component unknown;OBMAFP S.X. H.G.
0.43 55.3 At1g76950 844030 PRAF1 F:chromatin binding, zinc ion binding, Ran GTPase binding;P:biological_process unknown;C:cellular_component unknown;MOPBFAV S.X. H.G.
0.42 53.9 At1g55325 841978 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MBPOF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
58.8 99.8 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
50.8 99.8 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
35.8 99.7 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
27.1 99.7 GSM133773 Lindsey_1-25_torpedo-meristem_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
20.7 99.6 GSM142642 MC002_ATH1_A7.2-dubos-wLh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
18.7 99.5 GSM142623 MC002_ATH1_A1.1-dubos-wtx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
18.2 99.5 GSM142646 MC002_ATH1_A8.3-dubos-aih GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
17.2 99.5 GSM142629 MC002_ATH1_A3.1-dubos-6kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
17.0 99.5 GSM142643 MC002_ATH1_A7.3-dubos-wLh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
16.2 99.5 GSM128662 Underwood_1-15_Cor-5x10e7-10h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 4e-1 38 At3g22180 821782 zinc finger (DHHC type) family protein F:zinc ion binding;P:biological_process unknown;C:plasma membrane;MOFP C.G. S.X.
0.01 4e-1 38 At3g50760 824240 GATL2 (Galacturonosyltransferase-like 2) Encodes a protein with putative galacturonosyltransferase activity. C.G. S.X.
0.01 4e-1 38 At1g73960 843733 TAF2 (TBP-ASSOCIATED FACTOR 2) F:metallopeptidase activity, zinc ion binding;P:unknown;C:cellular_component unknown;MOBFPAV C.G. S.X.
0.01 4e-1 38 At1g27180 839607 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAV C.G. S.X.
0.01 4e-1 38 At1g27170 839606 ATP binding / protein binding / transmembrane receptor F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:chloroplast;PMBOFAV C.G. S.X.
0.01 2e+0 36 At5g44500 834477 small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative F:molecular_function unknown;P:unknown;C:nucleolus, small nucleolar ribonucleoprotein complex, nucleus;MPFBOVA C.G. S.X.
0.01 2e+0 36 At3g59780 825147 - F:molecular_function unknown;P:biological_process unknown;C:nucleus, chloroplast;OBMFPV C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 2e+0 36 Glycine max Gma.7603.1.S1_at BU548978 - - 3e-11 At3g14410 transporter-related C.G. S.X.
0.01 5e-2 40 Hordeum vulgare Contig6461_s_at Contig6461 - - 7e-17 At1g52360 coatomer protein complex, subunit beta 2 (beta prime), putative C.G. S.X.
0.01 3e+0 36 Oryza sativa Os06g0552300 AK101229.1 - Plant protein of unknown function DUF822 familyprotein 5e-8 At1g78700 brassinosteroid signalling positive regulator-related C.G. S.X.
0.03 1e-4 50 Populus trichocarpa PtpAffx.200443.1.S1_at pmrna894 hypothetical protein - 1e-4 At4g11670 - C.G. S.X.
0.01 4e-1 38 Triticum aestivum TaAffx.86307.1.S1_at CA611540 - - 1e-3 At4g21390 B120 C.G. S.X.
0.01 4e-1 36 Vitis vinifera 1615208_at CF603150 hypothetical protein LOC100255070 - 3e-19 At5g22850 aspartyl protease family protein C.G. S.X.
0.01 3e+0 34 Zea mays Zm.9583.1.A1_at CB351275 - - 1e+0 At4g13170 60S ribosomal protein L13A (RPL13aC) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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