CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g11650

Gene name ATOSM34 (osmotin 34)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.44 57.2 At4g11650 826770 ATOSM34 (osmotin 34) osmotin-like protein S.X. H.G.
0.89 94.6 At4g19810 827725 glycosyl hydrolase family 18 protein F:cation binding, chitinase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall;BMFOVPA S.X. H.G.
0.80 89.8 At2g43590 818961 chitinase, putative F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBFOMV S.X. H.G.
0.50 65.3 At2g15120 3768033 - F:unknown;P:unknown;C:unknown S.X. H.G.
0.40 50.8 At4g16260 827320 catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:response to salt stress;C:cell wall, plasma membrane;PO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
53.6 99.8 E-ATMX-31-raw-cel-1516948001
44.6 99.8 E-ATMX-31-raw-cel-1516947984
42.3 99.8 E-ATMX-31-raw-cel-1516948018
39.3 99.8 GSM39208 RRE2_C2 GSE2169 rre1 and rre2 mutants
36.9 99.7 GSM39213 RRE2_Chitin3 GSE2169 rre1 and rre2 mutants
35.6 99.7 GSM39214 RRE2_Chitin4 GSE2169 rre1 and rre2 mutants
33.6 99.7 GSM142728 CH001_ATH1_A007-Hampt-c4b GSE6161 Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
33.6 99.7 GSM291118 root - 21% oxygen - 48h - B GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
33.0 99.7 GSM39200 Col_C2 GSE2169 rre1 and rre2 mutants
31.2 99.7 GSM39209 RRE2_C3 GSE2169 rre1 and rre2 mutants
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 1e+0 34 At3g04350 819590 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMBO C.G. S.X.
0.02 1e+0 34 At2g28500 817398 LBD11 (LOB DOMAIN-CONTAINING PROTEIN 11) F:unknown;P:biological_process unknown;C:chloroplast;PBOMVAF C.G. S.X.
0.01 6e+0 32 At5g47690 834820 binding F:binding;P:biological_process unknown;C:mitochondrion, nucleus, chloroplast;MOFPBVA C.G. S.X.
0.01 6e+0 32 At5g08230 830719 PWWP domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.01 6e+0 32 At4g14390 827084 ankyrin repeat family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBVA C.G. S.X.
0.02 6e+0 32 At4g05310 825879 ubiquitin family protein F:molecular_function unknown;P:protein modification process;C:cellular_component unknown;POMFBV C.G. S.X.
0.02 6e+0 32 At3g25640 822151 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 3e-2 40 Glycine max Gma.2821.2.S1_a_at BI469945 PR-5 protein - 2e-2 At4g11650 ATOSM34 (osmotin 34) C.G. S.X.
0.04 3e+0 32 Hordeum vulgare AF016328_at AF016328 - - 7e-2 At1g75050 - C.G. S.X.
0.03 1e+1 32 Oryza sativa OsAffx.23423.1.S1_at - - - 0 C.G. S.X.
0.13 1e-4 48 Populus trichocarpa PtpAffx.2271.1.S1_s_at CA933996 hypothetical protein - 1e-4 At4g11650 ATOSM34 (osmotin 34) C.G. S.X.
0.03 6e+0 32 Triticum aestivum TaAffx.53952.1.S1_at CA687476 - - 3e+0 At4g11650 ATOSM34 (osmotin 34) C.G. S.X.
0.08 7e-6 50 Vitis vinifera 1616413_at AF003007.1 VVTL1 - 4e-5 At4g11650 ATOSM34 (osmotin 34) C.G. S.X.
0.03 1e+1 30 Zea mays ZmAffx.1353.1.S1_at 40794996-44 - - 6e-1 At5g35338 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009651 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.
C GO:0051707 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from another living organism.
C GO:0009816 A response of an organism to a bacterium that prevents the occurrence or spread of disease.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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