CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g11610

Gene name C2 domain-containing protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g11610 826766 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF S.X. H.G.
0.89 94.6 At5g63650 836485 SNRK2.5 (SNF1-RELATED PROTEIN KINASE 2.5) encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. S.X. H.G.
0.67 81.6 At3g14370 820658 WAG2 The WAG2 and its homolog, WAG1 each encodes protein-serine/threonine kinase that are nearly 70% identical to PsPK3 protein. All three together with CsPK3 belong to PsPK3-type kinases. At the N-terminus, all four possess a serine/threonine-rich domain. They are closely related to Arabidopsis kinases PINOID. wag1/wag2 double mutants exhibit a pronounced wavy root phenotype when grown vertically on agar plates (while wild-type plants develop wavy roots only on plates inclined to angles less than 90 degrees), indicating an overlapping role for WAG1 and WAG2 as suppressors of root waving. Simultaneous disruption of PID(AT2G34650) and its 3 closest homologs (PID2/AT2G26700, WAG1/AT1G53700, and WAG2/AT3G14370) abolishes the formation of cotyledons. S.X. H.G.
0.67 81.6 At4g35720 829724 unknown protein F:unknown;P:unknown;C:unknown;PO S.X. H.G.
0.55 70.6 At2g19660 816485 DC1 domain-containing protein F:molecular_function unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
122.5 99.9 E-MEXP-1468-raw-cel-1591138853
114.6 99.9 GSM184909 Arabidopsis, root cells, epidermis and lateral root cap, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
107.3 99.9 GSM184912 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
105.2 99.9 E-NASC-78-raw-cel-1463195219
99.6 99.9 GSM266668 Arabidopsis, root cells, columella root cap, -Fe, replicate 3 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
91.1 99.9 GSM134515 Col-0_4day_dark_+lincomycin_rep1 GSE5759 red illumination w/o lincomycin
89.6 99.9 GSM266666 Arabidopsis, root cells, columella root cap, -Fe, replicate 1 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
88.9 99.9 GSM184894 Arabidopsis, root cells, columella root cap, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
87.4 99.9 E-MEXP-1468-raw-cel-1591138985
84.7 99.9 E-MEXP-1468-raw-cel-1591139018
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.08 3e-20 101 At3g57880 824957 C2 domain-containing protein F:molecular_function unknown;P:tryptophan biosynthetic process;C:endoplasmic reticulum, cell wall;MPOF C.G. S.X.
0.09 1e-16 89 At5g12970 831137 C2 domain-containing protein F:molecular_function unknown;P:tryptophan biosynthetic process;C:cellular_component unknown;MPOF C.G. S.X.
0.06 2e-15 85 At1g51570 841582 C2 domain-containing protein F:unknown;P:tryptophan biosynthetic process;C:endoplasmic reticulum, cell wall;MPOF C.G. S.X.
0.03 7e-9 63 At4g20080 827753 C2 domain-containing protein F:unknown;P:unknown;C:cellular_component unknown;PMOF C.G. S.X.
0.07 3e-5 52 At5g06850 830576 C2 domain-containing protein F:molecular_function unknown;P:tryptophan biosynthetic process;C:cellular_component unknown;MPOF C.G. S.X.
0.05 1e-4 50 At1g22610 838867 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPOF C.G. S.X.
0.09 4e-4 48 At5g48060 834858 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF C.G. S.X.
0.03 4e-4 48 At3g03680 821190 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBPFVA C.G. S.X.
0.04 2e-3 46 At3g61300 825302 C2 domain-containing protein F:molecular_function unknown;P:tryptophan biosynthetic process;C:cellular_component unknown;MPOFV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 2e-9 65 Glycine max Gma.4712.1.A1_at AW310069 - - 1e-3 At1g51570 C2 domain-containing protein C.G. S.X.
0.05 3e-3 44 Hordeum vulgare Contig13100_at Contig13100 - - 8e-33 At1g51570 C2 domain-containing protein C.G. S.X.
0.05 3e-6 56 Oryza sativa Os05g0370600 AK102476.1 - C2 domain containing protein 2e-21 At3g57880 C2 domain-containing protein C.G. S.X.
0.24 2e-12 75 Populus trichocarpa PtpAffx.200430.1.S1_at pmrna864 hypothetical protein - 2e-12 At4g11610 C2 domain-containing protein C.G. S.X.
0.04 2e-3 46 Triticum aestivum Ta.6672.1.S1_a_at BJ309634 - - 3e-27 At1g51570 C2 domain-containing protein C.G. S.X.
0.07 8e-12 71 Vitis vinifera 1607427_at CF213911 hypothetical protein LOC100253432 - 1e-5 At4g00700 C2 domain-containing protein C.G. S.X.
0.07 1e-8 61 Zea mays Zm.6262.1.A1_at AY104073.1 - - 1e-2 At5g12970 C2 domain-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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