CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g11470

Gene name protein kinase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.40 50.8 At4g11470 826752 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.73 85.5 At3g48650 3769688 - F:unknown;P:unknown;C:unknown S.X. H.G.
0.67 81.6 At1g57650 842141 - F:unknown;P:defense response;C:cellular_component unknown;PMBOFAV S.X. H.G.
0.67 81.6 At3g28890 822523 AtRLP43 (Receptor Like Protein 43) F:protein binding, kinase activity;P:signal transduction;C:endomembrane system;PMOBFAV S.X. H.G.
0.57 73.8 At3g44350 823560 anac061 (Arabidopsis NAC domain containing protein 61) F:transcription factor activity;P:multicellular organismal development, response to chitin, regulation of transcription;C:cellular_component unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
462.9 100.0 E-MEXP-807-raw-cel-1173273252
241.9 100.0 E-MEXP-807-raw-cel-1173273144
176.1 100.0 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
171.5 100.0 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
160.6 99.9 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
149.3 99.9 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
121.6 99.9 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
121.1 99.9 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
118.7 99.9 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
111.3 99.9 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.80 0 1027 At4g11480 826753 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.31 6e-141 502 At4g11460 826751 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.21 1e-67 258 At4g23250 828424 EMB1290 (EMBRYO DEFECTIVE 1290) F:protein kinase activity, kinase activity;P:embryonic development ending in seed dormancy, protein amino acid autophosphorylation;C:plasma membrane;MPOBFVA C.G. S.X.
0.25 3e-62 240 At4g23200 828419 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:vacuole;MPOBFVA C.G. S.X.
0.23 1e-61 238 At4g11530 826757 kinase F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.31 3e-59 230 At4g23290 828428 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:mitochondrion;MPOBFVA C.G. S.X.
0.30 1e-52 208 At4g23240 828423 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVA C.G. S.X.
0.26 5e-52 206 At4g23260 828425 ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:response to abscisic acid stimulus;C:endomembrane system;MPOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 4e-4 48 Glycine max GmaAffx.73104.1.S1_at BU083628 - - 3e-16 At4g27300 S-locus protein kinase, putative C.G. S.X.
0.05 8e-3 42 Hordeum vulgare Contig18728_at Contig18728 - - 6e-6 At1g61610 S-locus lectin protein kinase family protein C.G. S.X.
0.06 1e-4 50 Oryza sativa Os09g0551400 9637.m03224 - - 2e-5 At4g23280 protein kinase, putative C.G. S.X.
0.17 6e-9 63 Populus trichocarpa PtpAffx.224360.1.S1_x_at pmrna42826 hypothetical protein - 2e-42 At4g23190 CRK11 (CYSTEINE-RICH RLK11) C.G. S.X.
0.03 4e-3 44 Triticum aestivum TaAffx.110408.1.S1_at CA659216 - - 6e-4 At4g11470 protein kinase family protein C.G. S.X.
0.03 8e-5 48 Vitis vinifera 1612784_at CB923182 hypothetical protein LOC100257888 - 5e-6 At4g11490 protein kinase family protein C.G. S.X.
0.03 2e-6 54 Zea mays Zm.16088.1.A1_at CF046660 lysM receptor-like kinase - 2e-6 At4g11480 protein kinase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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