CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g11460

Gene name protein kinase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g11460 826751 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.20 14.4 At4g37800 829936 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative F:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, cell wall, apoplast;PFBO S.X. H.G.
0.13 5.8 At3g05730 819742 - Encodes a defensin-like (DEFL) family protein. S.X. H.G.
0.02 0.4 At5g65010 836625 ASN2 (ASPARAGINE SYNTHETASE 2) Encodes asparagine synthetase (ASN2). S.X. H.G.
0.01 0.2 At3g52340 824399 SPP2 (SUCROSE-6F-PHOSPHATE PHOSPHOHYDROLASE 2) sucrose-phosphatase (SPP2) S.X. H.G.
0.00 0.0 At5g04230 830302 PAL3 (PHENYL ALANINE AMMONIA-LYASE 3) Member of Phenylalanine ammonialyase (PAL) gene family.Differs significantly from PAL1 and PAL2 and other sequenced plant PAL genes S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
101.8 99.9 E-MEXP-711-raw-cel-1563002663
75.4 99.9 E-MEXP-711-raw-cel-1563002362
58.5 99.8 E-MEXP-711-raw-cel-1563002502
48.9 99.8 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
43.0 99.8 E-MEXP-711-raw-cel-1563002467
36.8 99.7 GSM9603 iaa17-6_control_3 GSE629 Auxin-mediated gene expression in WT, iaa17, axr3 and iaa5iaa6iaa19 mutants
35.0 99.7 E-MEXP-711-raw-cel-1563002537
34.9 99.7 E-MEXP-711-raw-cel-1563002429
33.5 99.7 GSM9579 nph4-1_control_3 GSE627 Auxin mediated gene expression in WT, arf7, arf19 and arf7 arf19 mutants
32.0 99.7 E-MEXP-285-raw-cel-440783091
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.36 1e-163 577 At4g11480 826753 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.31 6e-141 502 At4g11470 826752 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.33 1e-68 262 At4g23290 828428 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:mitochondrion;MPOBFVA C.G. S.X.
0.39 9e-66 252 At4g23240 828423 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVA C.G. S.X.
0.28 2e-63 244 At4g23250 828424 EMB1290 (EMBRYO DEFECTIVE 1290) F:protein kinase activity, kinase activity;P:embryonic development ending in seed dormancy, protein amino acid autophosphorylation;C:plasma membrane;MPOBFVA C.G. S.X.
0.17 8e-51 202 At4g11530 826757 kinase F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.29 5e-49 196 At4g23320 828431 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:unknown;MPOBFVA C.G. S.X.
0.33 5e-49 196 At4g23260 828425 ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:response to abscisic acid stimulus;C:endomembrane system;MPOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 2e-2 42 Glycine max Gma.17797.1.S1_at CD416100 - - 3e-12 At4g23180 CRK10 (CYSTEINE-RICH RLK10) C.G. S.X.
0.03 2e+0 34 Hordeum vulgare Contig18728_at Contig18728 - - 6e-6 At1g61610 S-locus lectin protein kinase family protein C.G. S.X.
0.01 8e-3 44 Oryza sativa Os09g0551400 9637.m03224 - - 2e-5 At4g23280 protein kinase, putative C.G. S.X.
0.05 6e-6 54 Populus trichocarpa PtpAffx.41881.1.S1_at DN484168 - - 3e-6 At4g11460 protein kinase family protein C.G. S.X.
0.02 2e-5 52 Triticum aestivum TaAffx.135629.1.S1_at CA728764 - - 5e-6 At4g23240 protein kinase family protein C.G. S.X.
0.04 8e-5 48 Vitis vinifera 1620671_at CA817707 hypothetical protein LOC100261049 - 1e-13 At1g11340 S-locus lectin protein kinase family protein C.G. S.X.
0.03 5e-1 36 Zea mays Zm.4299.1.S1_at CF046651 hypothetical protein LOC100279924 - 5e-14 At3g21630 CERK1 (CHITIN ELICITOR RECEPTOR KINASE 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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