Gene omics information

Query gene ID At4g11420
Gene name EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4050.8At4g11420826746EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A)Encodes a subunit of eukaryotic initiation factor 3 (eIF3), a multisubunit complex that is required for binding of mRNA to 40 S ribosomal subunits, stabilization of ternary complex binding to 40 S subunits, and dissociation of 40 and 60 S subunits.S.X.H.G.
0.6781.6At4g10320826624isoleucyl-tRNA synthetase, putative / isoleucine--tRNA ligase, putativeF:isoleucine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding;P:response to cadmium ion, tRNA aminoacylation for protein translation;C:cytosol;OBAMFPS.X.H.G.
0.6781.6At5g20890832213chaperonin, putativeF:unfolded protein binding, protein binding, ATP binding;P:protein folding, cellular protein metabolic process;C:anchored to plasma membrane, cell wall;BOMFPAS.X.H.G.
0.6075.7At5g26710832718glutamate-tRNA ligase, putative / glutamyl-tRNA synthetase, putatuve / GluRS, putativeF:glutamate-tRNA ligase activity;P:glutamyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:cytoplasm;BOMFAPS.X.H.G.
0.5065.3At3g03960819549chaperonin, putativeF:unfolded protein binding, protein binding, ATP binding;P:protein folding, cellular protein metabolic process;C:membrane;BOMFAPS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
12.799.3GSM133117RIKEN-YAMAUCHI1AGSE5687AtGenExpress: Different temperature treatment of seeds
11.099.2GSM133120RIKEN-YAMAUCHI2BGSE5687AtGenExpress: Different temperature treatment of seeds
10.999.2GSM265418Arabidopsis, root, longitudinal zone 1, standard conditions, rep 1GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
10.599.2GSM265419Arabidopsis, root, longitudinal zone 1, standard conditions, rep 2GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
10.199.2GSM265426Arabidopsis, root, longitudinal zone 1, -Fe conditions, rep 1GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
9.599.1GSM133307RIKEN-NAKABAYASHI3AGSE5700AtGenExpress: Effect of ABA during seed imbibition
9.399.1GSM142596DB001_ATH1_A6-Brown-calGSE6148The trans-differentiation of cultured Arabidopsis cells
9.299.1GSM133974Birnbaum_1-4_StageI-1_Rep1_ATH1GSE5749A gene expression map of the Arabidopsis root
9.099.1GSM142594DB001_ATH1_A4-Brown-calGSE6148The trans-differentiation of cultured Arabidopsis cells
8.999.0GSM265427Arabidopsis, root, longitudinal zone 1, -Fe conditions, rep 2GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.037e-1273At4g23330828432eukaryotic translation initiation factor-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMC.G.S.X.
0.011e-140At4g34080829554unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOBC.G.S.X.
0.011e-140At2g45260819134unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;POMBFC.G.S.X.
0.014e-138At5g41020834104myb family transcription factorF:transcription factor activity, DNA binding;P:unknown;C:unknown;MOFBPVAC.G.S.X.
0.014e-138At4g33320829468unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBC.G.S.X.
0.014e-138At3g50373824200unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.014e-138At2g15400816032NRPE3BNon-catalytic subunit of Nuclear DNA-dependent RNA polymerase V; homologous to budding yeast RPB3 and the E. coli RNA polymerase alpha subunit. A closely related paralog, At2g15430 can substitute for At2g15400 in the context of Pol V and encodes the equivalent subunit of Pol II and Pol IV.C.G.S.X.
0.014e-138At1g08730837394XICClass XI myosin geneC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.054e-20101Glycine maxGmaAffx.3983.2.S1_atBU091738--7e-21At4g11420EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A)C.G.S.X.
0.021e-861Hordeum vulgareContig11880_atContig11880--2e+0At2g03110RNA binding / nucleic acid bindingC.G.S.X.
0.091e-1793Oryza sativaOs01g0120800AK106560.1-Eukaryotic translation initiation factor 3 subunit10 (eIF-3 theta) (Eukaryotic translation initiationfactor 3 large subunit) (eIF3a) (p114)9e-18At4g11420EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A)C.G.S.X.
0.061e-1483Populus trichocarpaPtp.2120.1.S1_atCK089943hypothetical protein-3e-15At4g11420EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A)C.G.S.X.
0.072e-1895Triticum aestivumTa.13478.1.S1_atBJ323032--2e-18At4g11420EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A)C.G.S.X.
0.094e-2099Vitis vinifera1608572_atCF513995hypothetical protein LOC100244162-7e-20At4g11420EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A)C.G.S.X.
0.165e-1169Zea maysZm.6558.1.S1_atAF073329.1eukaryotic initiation factor3-1e-10At4g11420EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
SGO:0006413The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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