CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g11410

Gene name short-chain dehydrogenase/reductase (SDR) family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.19 12.7 At4g11410 826745 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPA S.X. H.G.
0.40 50.8 At1g31440 840034 SH3 domain-containing protein 1 (SH3P1) F:clathrin binding;P:unknown;C:endomembrane system, plasma membrane;MOBPFVA S.X. H.G.
0.25 22.6 At4g16830 827389 nuclear RNA-binding protein (RGGA) F:RNA binding;P:biological_process unknown;C:nucleus, cytoplasm;MBPOFVA S.X. H.G.
0.20 14.4 At3g46980 823851 transporter-related Encodes an inorganic phosphate transporter (PHT4;3). S.X. H.G.
0.07 1.9 At5g50520 835120 nodulin family protein F:unknown;P:unknown;C:endomembrane system;BOPFMA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
18.8 99.5 E-MEXP-449-raw-cel-676423253
17.5 99.5 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
14.4 99.4 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
12.7 99.3 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
11.3 99.3 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
10.8 99.2 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
10.8 99.2 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
10.4 99.2 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
10.1 99.2 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
8.7 99.0 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.34 2e-34 147 At4g23420 828441 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPA C.G. S.X.
0.33 1e-26 121 At4g23430 828442 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:chloroplast, chloroplast inner membrane, chloroplast envelope;BOMFPA C.G. S.X.
0.07 5e-4 46 At5g02540 831913 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPA C.G. S.X.
0.02 5e-1 36 At4g09180 826499 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMO C.G. S.X.
0.02 2e+0 34 At5g54210 835509 NLI interacting factor (NIF) family protein F:phosphoprotein phosphatase activity;P:biological_process unknown;C:nucleus;MOFPB C.G. S.X.
0.02 2e+0 34 At4g04580 825790 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.49 1e-11 71 Glycine max GmaAffx.90994.1.S1_s_at CF806719 - - 7e-12 At4g11410 short-chain dehydrogenase/reductase (SDR) family protein C.G. S.X.
0.09 1e-6 54 Hordeum vulgare Contig21326_at Contig21326 - - 2e-6 At4g11410 short-chain dehydrogenase/reductase (SDR) family protein C.G. S.X.
0.10 2e-4 48 Oryza sativa Os09g0570300 AK058687.1 - Short-chain dehydrogenase Tic32 2e-4 At4g11410 short-chain dehydrogenase/reductase (SDR) family protein C.G. S.X.
0.52 2e-28 127 Populus trichocarpa Ptp.7404.1.S1_at DN487338 hypothetical protein - 2e-28 At4g11410 short-chain dehydrogenase/reductase (SDR) family protein C.G. S.X.
0.03 5e-1 36 Triticum aestivum Ta.24857.2.S1_a_at CA669717 - - 2e-1 At4g11410 short-chain dehydrogenase/reductase (SDR) family protein C.G. S.X.
0.23 4e-14 77 Vitis vinifera 1608159_at CB969766 hypothetical protein LOC100242214 - 8e-14 At4g11410 short-chain dehydrogenase/reductase (SDR) family protein C.G. S.X.
0.08 5e-5 48 Zea mays Zm.6750.1.S1_at BM333179 hypothetical protein LOC100217007 - 2e-4 At4g11410 short-chain dehydrogenase/reductase (SDR) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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