CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g11370

Gene name RHA1A

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.25 22.6 At4g11370 826739 RHA1A Encodes a putative RING-H2 finger protein RHA1a. S.X. H.G.
0.50 65.3 At3g26830 822298 PAD3 (PHYTOALEXIN DEFICIENT 3) Mutations in pad3 are defective in biosynthesis of the indole derived phytoalexin camalexin. Encodes a cytochrome P450 enzyme that catalyzes the conversion of dihydrocamalexic acid to camalexin. S.X. H.G.
0.33 38.1 At3g28930 822529 AIG2 (AVRRPT2-INDUCED GENE 2) avrRpt2-induced gene that exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2 S.X. H.G.
0.31 33.8 At1g33030 840198 O-methyltransferase family 2 protein F:O-methyltransferase activity;P:lignin biosynthetic process;C:cytosol;PBFOM S.X. H.G.
0.08 2.3 At2g29720 817522 CTF2B Encodes CTF2B. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
165.3 100.0 GSM133029 BC482-1 GSE5684 AtGenExpress: Pathogen Series: Response to Botrytis cinerea infection
118.0 99.9 GSM134457 St.Clair_1-82_294_Mt-0_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1 GSE5758 Expression Level Polymorphism Project (ELP) - Mt-0
115.1 99.9 GSM133030 BC482-2 GSE5684 AtGenExpress: Pathogen Series: Response to Botrytis cinerea infection
81.5 99.9 GSM134386 St.Clair_1-47_334_Est_0.30mM-SA-in-0.02%-silwet_Rep2_ATH1 GSE5754 Expression Level Polymorphism Project (ELP) - Est
78.3 99.9 GSM134351 St.Clair_1-12_407_Col-0_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1 GSE5752 Expression Level Polymorphism Project (ELP) - Col-0
77.4 99.9 GSM134459 St.Clair_1-84_379_Mt-0_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1 GSE5758 Expression Level Polymorphism Project (ELP) - Mt-0
69.3 99.9 GSM134404 St.Clair_1-101_324_Tsu-1_0.30mM-SA-in-0.02%-silwet_Rep2_ATH1 GSE5755 Expression Level Polymorphism Project (ELP) - Tsu-1
63.9 99.8 GSM131161 AtGen_C-11_2-Pi-6_REP2_ATH1 GSE5616 AtGenExpress: Response to Phytophthora infestans
62.1 99.8 GSM131160 AtGen_C-10_1-Pi-6_REP1_ATH1 GSE5616 AtGenExpress: Response to Phytophthora infestans
61.2 99.8 GSM142837 MG001_ATH1_A16-Torres-6N1 GSE6176 Impact of Type III effectors on plant defense responses
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.83 2e-116 418 At4g11360 826738 RHA1B Encodes a putative RING-H2 finger protein RHA1b. C.G. S.X.
0.04 6e-2 38 At2g18670 816382 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV C.G. S.X.
0.02 2e-1 36 At3g29390 822600 RIK (RS2-Interacting KH protein) Nuclear localized K-homology containing protein that interacts with AS1. C.G. S.X.
0.03 2e-1 36 At1g49200 841343 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV C.G. S.X.
0.03 9e-1 34 At5g41400 834142 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB C.G. S.X.
0.02 9e-1 34 At3g61500 825323 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.03 9e-1 34 At3g05200 819684 ATL6 Encodes a putative RING-H2 zinc finger protein ATL6 (ATL6). C.G. S.X.
0.02 9e-1 34 At2g24820 817019 TIC55 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 55) F:electron carrier activity, oxidoreductase activity, 2 iron, 2 sulfur cluster binding;P:oxidation reduction;C:chloroplast, chloroplast envelope;BOPMFA C.G. S.X.
0.02 9e-1 34 At1g03350 838679 BSD domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 5e+0 32 Glycine max GmaAffx.91841.1.S1_at CF807566 - - 8e-28 At3g22110 PAC1 C.G. S.X.
0.04 2e+0 32 Hordeum vulgare HVSMEg0013O09r2_x_at HVSMEg0013O09r2 - - 3e+0 At4g11370 RHA1A C.G. S.X.
0.03 1e-1 38 Oryza sativa Os03g0391000 CA763566 - Autophagy 4a 2e-3 At2g44140 autophagy 4a (APG4a) C.G. S.X.
0.03 1e+0 34 Populus trichocarpa PtpAffx.59515.1.S1_s_at BU895418 hypothetical protein - 2e-2 At5g61470 zinc finger (C2H2 type) family protein C.G. S.X.
0.04 4e+0 32 Triticum aestivum TaAffx.119948.1.A1_at BJ250742 - - 3e+0 At4g11370 RHA1A C.G. S.X.
0.04 4e+0 30 Vitis vinifera 1616047_s_at CF569212.1 hypothetical protein LOC100266255 - 9e+0 At5g05113 unknown protein C.G. S.X.
0.03 6e+0 30 Zea mays Zm.17258.1.S1_at CK369580 - - 2e-2 At2g36100 integral membrane family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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