Gene omics information

Query gene ID At4g11270
Gene name transducin family protein / WD-40 repeat family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.7486.1At4g11270826729transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:cytosol;MFBOPS.X.H.G.
0.6982.9At3g24200822006FAD binding / monooxygenase/ oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygenF:oxidoreductase activity, monooxygenase activity, FAD binding, oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen;P:ubiquinone biosynthetic process, metabolic process;C:unknown;BOFMPAS.X.H.G.
0.6781.6At4g16100827296unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POS.X.H.G.
0.6277.3At4g09680826554unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PS.X.H.G.
0.6176.7At1g04230839575unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPBVS.X.H.G.
0.5974.7At3g59380825107FTA (FARNESYLTRANSFERASE A)Encodes the alpha-subunit shared between protein farnesyltransferase and protein geranylgeranyltransferase-I. Involved in protein prenylation: covalent attachment of the C-15 isoprene farnesyl or the C-20 isoprene geranylgeranyl groups to the C-terminal end of some proteins. Involved in shoot and flower meristem homeostasis, and response to ABA and drought. Also regulates leaf cell shape. Mutant is epistatic to era1.S.X.H.G.
0.5773.8At1g04790839412zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVS.X.H.G.
0.5570.6At1g13450837905DNA binding protein GT-1F:transcription factor activity;P:regulation of transcription;C:nucleus;PMFOBS.X.H.G.
0.5570.6At1g56560842110beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putativeF:catalytic activity, beta-fructofuranosidase activity;P:biological_process unknown;C:unknown;OPBS.X.H.G.
0.5368.6At2g39760818561BPM3F:protein binding;P:biological_process unknown;C:unknown;MPOFVS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
301.9100.0GSM133758Lindsey_1-11_heart-stage-root_Rep2_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
74.699.9E-ATMX-35-raw-cel-1574334832
65.599.8E-ATMX-35-raw-cel-1574334816
48.199.8E-ATMX-35-raw-cel-1574334800
20.299.6GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
13.799.4GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
12.399.3GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
11.399.3GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
11.099.2GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
10.899.2GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.015e-138At3g20475821593MSH5 (MUTS-HOMOLOGUE 5)Encodes MSH5, a homologue of the MutS-homolog family of genes required for normal levels of recombination in budding yeast, mouse and Caenorhabditis elegans. Involved in meiotic recombination. Required for the formation of Class I interference-sensitive crossovers. Transcripts of AtMSH5 are specific to reproductive tissues and expression of the protein is abundant during prophase I of meiosis. Involved in meiotic recombination. Required for the formation of Class I interference-sensitive crossovers.C.G.S.X.
0.015e-138At2g43900818994inositol or phosphatidylinositol phosphatase/ inositol-polyphosphate 5-phosphataseF:inositol-polyphosphate 5-phosphatase activity, inositol or phosphatidylinositol phosphatase activity;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;OMBFPVAC.G.S.X.
0.012e+036At5g60740836195ATPase, coupled to transmembrane movement of substancesF:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:endomembrane system, membrane;BOMFAPVC.G.S.X.
0.012e+036At4g31020829229unknown proteinF:unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;OBMPFVAC.G.S.X.
0.012e+036At4g24910828593unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POBC.G.S.X.
0.012e+036At1g30200839900F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.012e+036At1g56000842051amine oxidase-relatedF:electron carrier activity, oxidoreductase activity;P:unknown;C:unknown;OBPFMAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.059e-1067Glycine maxGma.4997.2.S1_atBE658925--2e-10At4g11270transducin family protein / WD-40 repeat family proteinC.G.S.X.
0.013e-138Hordeum vulgareContig20893_atContig20893--4e-2At1g44542cyclase family proteinC.G.S.X.
0.054e-346Oryza sativaOs06g0331300AK121512.1-Hypothetical protein3e-3At4g11270transducin family protein / WD-40 repeat family proteinC.G.S.X.
0.133e-25119Populus trichocarpaPtpAffx.200403.1.S1_atpmrna807hypothetical protein-2e-25At4g11270transducin family protein / WD-40 repeat family proteinC.G.S.X.
0.011e-140Triticum aestivumTa.8138.2.S1_atCA679487--2e+1At3g20810transcription factor jumonji (jmjC) domain-containing proteinC.G.S.X.
0.024e-859Vitis vinifera1619704_atCF213236--1e+0At1g17800plastocyanin-like domain-containing proteinC.G.S.X.
0.031e-656Zea maysZm.1866.1.A1_atAW498013--5e-7At4g11270transducin family protein / WD-40 repeat family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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