CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g11190

Gene name disease resistance-responsive family protein / dirigent family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.55 70.6 At4g11190 826721 disease resistance-responsive family protein / dirigent family protein F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P S.X. H.G.
0.82 90.9 At2g16005 816096 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFO S.X. H.G.
0.55 70.6 At4g29270 829048 acid phosphatase class B family protein F:acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBO S.X. H.G.
0.49 63.5 At5g47990 834850 CYP705A5 encodes a member of the CYP705A family of cytochrome P450 enzymes. It appears to catalyze the addition of a double bond to thalian-diol at carbon 15. Reduced levels of THAD expression lead to a build up of thalian-diol in root extracts. thad1-1 mutants also have longer roots than wild type seedlings. S.X. H.G.
0.46 59.8 At2g39310 818516 JAL22 (JACALIN-RELATED LECTIN 22) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO S.X. H.G.
0.44 57.2 At3g16450 820893 jacalin lectin family protein F:molecular_function unknown;P:response to cold;C:nucleus;PO S.X. H.G.
0.39 48.4 At5g48000 834851 CYP708A2 Encodes a member of the CYP708A family of cytochrome P450 enzymes. THAH appears to add a hydroxyl group to the triterpene thalianol. thah1 mutants have an elevated accumulation of thalianol. thah1-1 mutants have longer roots than wild type plants. Thalian-diol and desaturated thalian-diol are lost from the root extracts of thah1-1 mutants. Overexpression of the sequence from At5g48000.1 rescues the thah1-1 mutant phenotype (Field 2008); it is unknown whether the shorter sequences associated with other gene models would provide functional complementation. S.X. H.G.
0.38 46.7 At2g43535 818955 trypsin inhibitor, putative Encodes a defensin-like (DEFL) family protein. S.X. H.G.
0.35 41.6 At1g70850 843422 MLP34 (MLP-LIKE PROTEIN 34) F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P S.X. H.G.
0.23 19.3 At1g73300 843664 scpl2 (serine carboxypeptidase-like 2) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
100.6 99.9 GSM265433 Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
79.1 99.9 E-MEXP-1112-raw-cel-1590665585
57.0 99.8 E-MEXP-1112-raw-cel-1590665533
55.8 99.8 GSM142669 SF002_ATH1_A7-Fille-ANGR4-12nodex GSE6155 Nutritional control of plant development: molecular analysis of the NO3- response pathway in Arabidopsis roots.
52.3 99.8 E-MEXP-1304-raw-cel-1530618235
50.8 99.8 GSM142675 SF002_ATH1_A6-Fille-WT+dex GSE6155 Nutritional control of plant development: molecular analysis of the NO3- response pathway in Arabidopsis roots.
48.7 99.8 E-MEXP-1112-raw-cel-1590665481
47.6 99.8 GSM265425 Arabidopsis, root, longitudinal zone 4, standard conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
45.7 99.8 GSM133993 Birnbaum_1-26_J0571-2_Rep2_ATH1 GSE5749 A gene expression map of the Arabidopsis root
41.5 99.8 GSM265432 Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.87 2e-147 521 At4g11210 826723 disease resistance-responsive family protein / dirigent family protein F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P C.G. S.X.
0.66 7e-42 171 At4g11180 826720 disease resistance-responsive family protein / dirigent family protein F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P C.G. S.X.
0.32 2e-30 133 At4g23690 828469 disease resistance-responsive family protein / dirigent family protein F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P C.G. S.X.
0.13 3e-7 56 At1g64160 842720 disease resistance-responsive family protein / dirigent family protein F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P C.G. S.X.
0.01 7e-2 38 At3g01180 820294 AtSS2 (starch synthase 2) F:transferase activity, transferring glycosyl groups;P:cellulose biosynthetic process, glucan biosynthetic process, biosynthetic process, glycogen biosynthetic process;C:chloroplast;OPBMFAV C.G. S.X.
0.02 3e-1 36 At3g54170 824584 ATFIP37 (ARABIDOPSIS THALIANA FKBP12 INTERACTING PROTEIN 37) Encodes protein that binds FKBP12. This interaction is disrupted by FK506 but not by cyclosporin A. C.G. S.X.
0.01 3e-1 36 At2g29040 817452 exostosin family protein F:catalytic activity;P:biological_process unknown;C:endomembrane system, membrane;OMPFBV C.G. S.X.
0.01 3e-1 36 At1g52430 841674 ubiquitin carboxyl-terminal hydrolase-related F:ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;POBMF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e-1 36 Glycine max PsAffx.C105000004_at PsAffx.C105000004 - - 3e-1 At4g11190 disease resistance-responsive family protein / dirigent family protein C.G. S.X.
0.03 2e+0 32 Hordeum vulgare Contig2856_s_at Contig2856 - - 4e+0 At4g21902 unknown protein C.G. S.X.
0.03 8e+0 32 Oryza sativa OsAffx.29442.1.S1_at - - - 0 C.G. S.X.
0.06 6e-3 42 Populus trichocarpa PtpAffx.203276.1.S1_at pmrna6493 hypothetical protein - 3e-3 At4g11190 disease resistance-responsive family protein / dirigent family protein C.G. S.X.
0.04 4e+0 32 Triticum aestivum Ta.12850.1.A1_at CA643781 - - 6e-1 At1g31170 SRX (SULFIREDOXIN) C.G. S.X.
0.03 5e+0 30 Vitis vinifera 1620680_at CF516453 - - 5e+0 At5g51080 RNase H domain-containing protein C.G. S.X.
0.04 7e+0 30 Zea mays ZmAffx.688.1.A1_at AI737201 - - 5e-2 At1g11650 RNA-binding protein 45 (RBP45), putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006952 Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
C GO:0009807 The chemical reactions and pathways resulting in the formation of lignans, any member of a class of plant metabolites related to lignins. Lignans are usually found as phenylpropanoid dimers in which the phenylpropanoid units are linked tail to tail and thus having a 2,3 dibenzylbutane skeleton, but higher oligomers can also exist.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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