Gene omics information

Query gene ID At4g11140
Gene name CRF1 (CYTOKININ RESPONSE FACTOR 1)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5570.6At4g11140826715CRF1 (CYTOKININ RESPONSE FACTOR 1)encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. Also named as CRF1 (cytokinin response factor 1).S.X.H.G.
0.6781.6At5g09970830858CYP78A7member of CYP78AS.X.H.G.
0.6075.7At5g07480830640oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:flavonoid biosynthetic process;C:cellular_component unknown;POBFMS.X.H.G.
0.3338.1At4g24150828515AtGRF8 (GROWTH-REGULATING FACTOR 8)Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in shoot and flower.S.X.H.G.
0.2522.6At2g24560816992carboxylesterase/ hydrolase, acting on ester bondsF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
576.1100.0GSM133119RIKEN-YAMAUCHI2AGSE5687AtGenExpress: Different temperature treatment of seeds
416.7100.0E-MEXP-849-raw-cel-1181980998
240.5100.0E-MEXP-849-raw-cel-1181981030
232.3100.0GSM133120RIKEN-YAMAUCHI2BGSE5687AtGenExpress: Different temperature treatment of seeds
231.0100.0E-MEXP-849-raw-cel-1181981006
228.1100.0E-MEXP-849-raw-cel-1181980990
185.2100.0E-MEXP-849-raw-cel-1181980982
161.099.9E-MEXP-849-raw-cel-1181981014
142.399.9E-MEXP-849-raw-cel-1181981046
133.699.9E-MEXP-849-raw-cel-1181981022
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.272e-24113At4g23750828475CRF2 (CYTOKININ RESPONSE FACTOR 2)encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.C.G.S.X.
0.141e-1377At5g53290835410CRF3 (CYTOKININ RESPONSE FACTOR 3)encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.C.G.S.X.
0.092e-1273At3g16770820929ATEBP (ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN)Encodes a member of the ERF (ethylene response factor) subfamily B-2 of the plant specific ERF/AP2 transcription factor family (RAP2.3). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.It is localized to the nucleus and acts as a transcriptional activator through the GCC-box. It has been identified as a suppressor of Bax-induced cell death by functional screening in yeast and can also suppress Bax-induced cell death in tobacco plants. Overexpression of this gene in tobacco BY-2 cells confers resistance to H2O2 and heat stresses. Overexpression in Arabidopsis causes upregulation of PDF1.2 and GST6. It is part of the ethylene signaling pathway and is predicted to act downstream of EIN2 and CTR1, but not under EIN3.C.G.S.X.
0.053e-1169At2g33710817936AP2 domain-containing transcription factor family proteinencodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.C.G.S.X.
0.135e-1065At3g61630825336CRF6 (CYTOKININ RESPONSE FACTOR 6)CRF6 encodes one of the six cytokinin response factors. CRF5 belongs to the AP2/ERF superfamily of the transcriptional factors. CRF proteins rapidly relocalize to the nucleus in response to cytokinin. Analysis of loos-of-function mutants revealed that the CRFs function redundantly to regulate the development of embryos, cotyledons and leaves.C.G.S.X.
0.062e-963At5g61600836281ethylene-responsive element-binding family proteinencodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.C.G.S.X.
0.067e-961At1g43160840915RAP2.6 (related to AP2 6)encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family (RAP2.6). The protein contains one AP2 domain. There are 7 members in this subfamily.C.G.S.X.
0.103e-859At4g27950828908CRF4 (CYTOKININ RESPONSE FACTOR 4)encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.071e-242Glycine maxGmaAffx.60303.1.S1_atBM886518--7e-11At1g22985AP2 domain-containing transcription factor, putativeC.G.S.X.
0.032e-136Hordeum vulgareContig25984_atContig25984--9e-1At4g24380unknown proteinC.G.S.X.
0.035e-240Oryza sativaOs02g0546600AK107852.1-AP2-domain DNA-binding protein5e-1At1g22985AP2 domain-containing transcription factor, putativeC.G.S.X.
0.173e-1273Populus trichocarpaPtpAffx.200385.1.S1_atpmrna770AP2/ERF domain-containing transcription factor-9e-13At4g11140CRF1 (CYTOKININ RESPONSE FACTOR 1)C.G.S.X.
0.034e-136Triticum aestivumTaAffx.9089.1.S1_atCA612906--1e+0At2g47520AP2 domain-containing transcription factor, putativeC.G.S.X.
0.045e-134Vitis vinifera1620766_atCF609305hypothetical protein LOC100249220-9e-18At1g23000heavy-metal-associated domain-containing proteinC.G.S.X.
0.047e-134Zea maysZmAffx.440.1.A1_atAI676978--2e-4At1g54410dehydrin family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0042991The directed movement of a transcription factor from the cytoplasm to the nucleus.
XGO:0048366The process whose specific outcome is the progression of the leaf over time, from its formation to the mature structure.
XGO:0048825The process whose specific outcome is the progression of the cotyledon over time, from its formation to the mature structure. The cotyledon is the modified leaf (seed leaf), found as part of the embryo in plant seeds. It is involved in either storage or absorption of food reserves. Dicotyledonous seeds contain two cotyledons, while monocotyledonous seeds contain only one. The cotyledons may appear above ground and show photosynthetic activity in the seedling.
CGO:0006355Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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