CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g10810

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g10810 826677 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P S.X. H.G.
0.71 84.2 At1g65720 842883 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.53 68.6 At3g52560 824422 UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4) MMZ4/UEV1D encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair by participating in lysine-63-based polyubiquitination reactions. UEV1D can form diubiquitin and triubiquitin chains in combination with UBC13A/UBC35 in vitro. It can also functionally complement an mms2 mutation in budding yeast, both by increasing mms2 mutant viability in the presence of the DNA damaging agent MMS, and by reducing the rate of spontaneous DNA mutation. It can also rescue an mms2 ubc13 double mutant in yeast in combination with UBC13A. MMZ4/UEV1D transcripts are found in most plant organs, like the other three MMZ/UEV1 family members, but it is normally present at higher levels. In addition, MMZ4/UEV1D is the only family member whose transcripts are detected in pollen. However, MMZ4/UEV1D transcript levels do not appear to be stress-inducible. uev1d-1 mutants are more sensitive than wild type plants to the DNA damaging agent MMS in seed germination and pollen germination assays. S.X. H.G.
0.50 65.3 At5g54680 835557 ILR3 (iaa-leucine resistant3) F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOFBA S.X. H.G.
0.30 32.1 At3g11530 820326 vacuolar protein sorting 55 family protein / VPS55 family protein F:transporter activity;P:transport;C:vacuole;FMPO S.X. H.G.
0.15 7.8 At5g58060 835918 YKT61 member of YKT6 Gene Family S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
15.0 99.4 GSM134519 Col-0_4day_red illumination_+lincomycin_rep1 GSE5759 red illumination w/o lincomycin
13.5 99.4 GSM131207 AtGen_D-41_3-DS_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
11.7 99.3 GSM131186 AtGen_D-19_2-PL_REP2_ATH1 GSE5617 AtGenExpress: Light treatments
11.1 99.2 GSM131211 AtGen_D-45_3-BS_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
10.9 99.2 E-MEXP-1468-raw-cel-1591138754
10.8 99.2 E-MEXP-1112-raw-cel-1590665793
10.7 99.2 GSM134518 Col-0_4day_red illumination_-lincomycin_rep2 GSE5759 red illumination w/o lincomycin
10.2 99.2 GSM131169 AtGen_D-1_1-DL_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
9.5 99.1 E-MEXP-1112-raw-cel-1590665377
9.0 99.1 GSM131199 AtGen_D-33_3-DL_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.19 8e-9 59 At4g24026 6240360 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.09 1e-4 46 At4g24030 828503 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.01 3e-2 38 At1g25540 839141 PFT1 (PHYTOCHROME AND FLOWERING TIME 1) Encodes a nuclear protein that acts in a phyB pathway (but downstream of phyB) and induces flowering in response to suboptimal light conditions. Mutants are hypo-responsive to far-red and hyper-responsive to red light and flower late under long day conditions. C.G. S.X.
0.03 1e-1 36 At2g40420 818635 amino acid transporter family protein Encodes a putative amino acid transporter. C.G. S.X.
0.05 5e-1 34 At5g57685 835875 AtGDU3 (Arabidopsis thaliana GLUTAMINE DUMPER 3) F:molecular_function unknown;P:secretion by cell;C:integral to membrane;P C.G. S.X.
0.04 5e-1 34 At5g44560 834483 VPS2.2 F:unknown;P:vesicle-mediated transport;C:ESCRT III complex;MPFOB C.G. S.X.
0.03 5e-1 34 At4g01310 827947 ribosomal protein L5 family protein F:structural constituent of ribosome;P:translation;C:in 6 components;BOPAFM C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 6e-1 34 Glycine max GmaAffx.3728.1.A1_at BE823061 - - 2e-4 At1g55080 unknown protein C.G. S.X.
0.07 2e-5 48 Hordeum vulgare Contig13660_at Contig13660 - - 8e-5 At4g10810 unknown protein C.G. S.X.
0.10 2e-7 56 Oryza sativa OsAffx.24915.1.S1_at - - - 0 C.G. S.X.
0.07 3e+0 32 Populus trichocarpa PtpAffx.97624.2.A1_at CV275140 - - 4e-11 At3g57150 NAP57 (Arabidopsis thaliana homologue of NAP57) C.G. S.X.
0.08 2e+0 32 Triticum aestivum TaAffx.56885.1.S1_x_at CA641842 - - 2e+0 At4g10810 unknown protein C.G. S.X.
0.08 5e-1 32 Vitis vinifera 1609341_s_at CF202467.1 hypothetical protein LOC100265359 - 2e-3 At5g40630 ubiquitin family protein C.G. S.X.
0.07 5e-8 56 Zea mays Zm.12112.1.A1_at BM382213 hypothetical protein LOC100193982 /// hypothetical protein LOC100276462 - 3e-7 At4g10810 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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