Gene omics information

Query gene ID At4g10810
Gene name unknown protein
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At4g10810826677unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PS.X.H.G.
0.7184.2At1g65720842883unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.5368.6At3g52560824422UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4)MMZ4/UEV1D encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair by participating in lysine-63-based polyubiquitination reactions. UEV1D can form diubiquitin and triubiquitin chains in combination with UBC13A/UBC35 in vitro. It can also functionally complement an mms2 mutation in budding yeast, both by increasing mms2 mutant viability in the presence of the DNA damaging agent MMS, and by reducing the rate of spontaneous DNA mutation. It can also rescue an mms2 ubc13 double mutant in yeast in combination with UBC13A. MMZ4/UEV1D transcripts are found in most plant organs, like the other three MMZ/UEV1 family members, but it is normally present at higher levels. In addition, MMZ4/UEV1D is the only family member whose transcripts are detected in pollen. However, MMZ4/UEV1D transcript levels do not appear to be stress-inducible. uev1d-1 mutants are more sensitive than wild type plants to the DNA damaging agent MMS in seed germination and pollen germination assays.S.X.H.G.
0.5065.3At5g54680835557ILR3 (iaa-leucine resistant3)F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOFBAS.X.H.G.
0.3032.1At3g11530820326vacuolar protein sorting 55 family protein / VPS55 family proteinF:transporter activity;P:transport;C:vacuole;FMPOS.X.H.G.
0.157.8At5g58060835918YKT61member of YKT6 Gene FamilyS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
15.099.4GSM134519Col-0_4day_red illumination_+lincomycin_rep1GSE5759red illumination w/o lincomycin
13.599.4GSM131207AtGen_D-41_3-DS_REP3_ATH1GSE5617AtGenExpress: Light treatments
11.799.3GSM131186AtGen_D-19_2-PL_REP2_ATH1GSE5617AtGenExpress: Light treatments
11.199.2GSM131211AtGen_D-45_3-BS_REP3_ATH1GSE5617AtGenExpress: Light treatments
10.799.2GSM134518Col-0_4day_red illumination_-lincomycin_rep2GSE5759red illumination w/o lincomycin
10.299.2GSM131169AtGen_D-1_1-DL_REP1_ATH1GSE5617AtGenExpress: Light treatments
9.099.1GSM131199AtGen_D-33_3-DL_REP3_ATH1GSE5617AtGenExpress: Light treatments
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.198e-959At4g240266240360unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.091e-446At4g24030828503unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PC.G.S.X.
0.013e-238At1g25540839141PFT1 (PHYTOCHROME AND FLOWERING TIME 1)Encodes a nuclear protein that acts in a phyB pathway (but downstream of phyB) and induces flowering in response to suboptimal light conditions. Mutants are hypo-responsive to far-red and hyper-responsive to red light and flower late under long day conditions.C.G.S.X.
0.031e-136At2g40420818635amino acid transporter family proteinEncodes a putative amino acid transporter.C.G.S.X.
0.055e-134At5g57685835875AtGDU3 (Arabidopsis thaliana GLUTAMINE DUMPER 3)F:molecular_function unknown;P:secretion by cell;C:integral to membrane;PC.G.S.X.
0.045e-134At5g44560834483VPS2.2F:unknown;P:vesicle-mediated transport;C:ESCRT III complex;MPFOBC.G.S.X.
0.035e-134At4g01310827947ribosomal protein L5 family proteinF:structural constituent of ribosome;P:translation;C:in 6 components;BOPAFMC.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.066e-134Glycine maxGmaAffx.3728.1.A1_atBE823061--2e-4At1g55080unknown proteinC.G.S.X.
0.072e-548Hordeum vulgareContig13660_atContig13660--8e-5At4g10810unknown proteinC.G.S.X.
0.102e-756Oryza sativaOsAffx.24915.1.S1_at---0C.G.S.X.
0.073e+032Populus trichocarpaPtpAffx.97624.2.A1_atCV275140--4e-11At3g57150NAP57 (Arabidopsis thaliana homologue of NAP57)C.G.S.X.
0.082e+032Triticum aestivumTaAffx.56885.1.S1_x_atCA641842--2e+0At4g10810unknown proteinC.G.S.X.
0.085e-132Vitis vinifera1609341_s_atCF202467.1hypothetical protein LOC100265359-2e-3At5g40630ubiquitin family proteinC.G.S.X.
0.075e-856Zea maysZm.12112.1.A1_atBM382213hypothetical protein LOC100193982 /// hypothetical protein LOC100276462-3e-7At4g10810unknown proteinC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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