Gene omics information

Query gene ID At4g10670
Gene name GTC2
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At4g10670826660GTC2Homologous to yeast SPT16, a general chromatin factor required for transcriptionS.X.H.G.
0.5974.7At1g32430840137F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.5267.4At1g35410840433-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.5065.3At3g22770821848F-box family protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.4963.5At4g04130825725transposable element geneF:unknown;P:unknown;C:unknownS.X.H.G.
0.4659.8At2g01390814667pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:chloroplast;POMFABS.X.H.G.
0.4659.8At1g44085841011glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBOFS.X.H.G.
0.4558.3At3g578203769732-F:unknown;P:unknown;C:unknownS.X.H.G.
0.4457.2At5g28790832995transposable element geneF:unknown;P:unknown;C:unknownS.X.H.G.
0.4355.3At2g15670816060-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
243.1100.0GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
237.9100.0GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
228.8100.0GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
193.5100.0GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
178.3100.0GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
178.1100.0GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
170.0100.0GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
166.4100.0GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
163.599.9GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
155.099.9GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.420930At4g10710826665SPT16 (global transcription factor C)encodes a component of the FAcilitates Chromatin Transcription (FACT) complex, SPT16.C.G.S.X.
0.011e-138At2g34930818058disease resistance family proteinF:protein binding;P:signal transduction, defense response to fungus, defense response;C:cell wall;PMOBFAVC.G.S.X.
0.011e-138At1g47620841171CYP96A8member of CYP96AC.G.S.X.
0.015e-136At1g65380842849CLV2 (clavata 2)Receptor-like protein containing leucine-rich repeats. Regulates both meristem and organ development in Arabidopsis.C.G.S.X.
0.015e-136At1g55560842005sks14 (SKU5 Similar 14)F:oxidoreductase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOAC.G.S.X.
0.012e+034At5g38210833803serine/threonine protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAC.G.S.X.
0.012e+034At5g14520831303pescadillo-relatedF:transcription coactivator activity;P:cell proliferation;C:nucleolus, intracellular;MFOPC.G.S.X.
0.012e+034At5g41220834124ATGSTT3 (GLUTATHIONE S-TRANSFERASE THETA 3)Encodes glutathione transferase belonging to the theta class of GSTs. Naming convention according to Wagner et al. (2002).C.G.S.X.
0.022e+034At4g32840829420PFK6 (PHOSPHOFRUCTOKINASE 6)F:6-phosphofructokinase activity;P:glycolysis;C:cytosol, 6-phosphofructokinase complex;BOMFPAVC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.037e-136Glycine maxGmaAffx.3325.1.S1_atBE330095--7e-11At4g10710SPT16 (global transcription factor C)C.G.S.X.
0.034e+032Hordeum vulgareHVSMEi0012E19r2_atHVSMEi0012E19r2--9e-1At2g16210transcriptional factor B3 family proteinC.G.S.X.
0.074e-963Oryza sativaOs04g0321600AK121570.1-Peptidase M24 family protein6e-22At4g10710SPT16 (global transcription factor C)C.G.S.X.
0.171e-1481Populus trichocarpaPtpAffx.210836.1.S1_atpmrna21278global transcription factor group-4e-35At4g10710SPT16 (global transcription factor C)C.G.S.X.
0.096e-1375Triticum aestivumTa.10860.1.S1_x_atAJ611303--7e-24At4g10710SPT16 (global transcription factor C)C.G.S.X.
0.032e+032Vitis vinifera1616611_atCF404283--2e-1At2g33220-C.G.S.X.
0.093e-1065Zea maysZm.12178.1.A1_atAF545812.1global transcription factor group C 102-1e-38At4g10710SPT16 (global transcription factor C)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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