CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g10640

Gene name IQD16 (IQ-domain 16)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.36 43.6 At4g10640 826656 IQD16 (IQ-domain 16) F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PMOF S.X. H.G.
0.83 91.4 At1g50650 841487 stigma-specific Stig1 family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPFOM S.X. H.G.
0.83 91.4 At1g68510 843180 LBD42 (LOB DOMAIN-CONTAINING PROTEIN 42) F:unknown;P:biological_process unknown;C:unknown;PF S.X. H.G.
0.81 90.4 At4g33600 829500 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFMOB S.X. H.G.
0.80 89.8 At1g71250 843466 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, lipase activity, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM S.X. H.G.
0.80 89.8 At2g14690 815957 endo-1,4-beta-xylanase/ hydrolase, hydrolyzing O-glycosyl compounds Encodes a putative glycosyl hydrolase family 10 protein (xylanase). S.X. H.G.
0.80 89.8 At3g08900 820039 RGP3 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 3) Encodes a reversible autoglycosylated protein peripherally associated with cell membranes. Highly expressed in roots ans suspension-cultured cells. S.X. H.G.
0.80 89.8 At4g33330 829469 transferase, transferring glycosyl groups F:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:endomembrane system;PMFBVO S.X. H.G.
0.80 89.8 At5g03810 831715 carboxylesterase/ hydrolase, acting on ester bonds / lipase F:hydrolase activity, acting on ester bonds, lipase activity, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM S.X. H.G.
0.79 89.1 At1g71120 843452 GLIP6 Contains lipase signature motif and GDSL domain. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
741.7 100.0 GSM311289 Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
611.9 100.0 GSM311290 Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
148.4 99.9 GSM252685 Arabidopsis Root from tip to 130 mm proximal to tip (cut 8dpg) rep2 GSE9996 Organ regeneration in plants is independent of stem cell niche activity
143.1 99.9 GSM252689 Regenerating Stump of Root Tip Cut at 130 mm first and then Recut after 0 hrs Taking 70 mm of Stump (8 dpg) rep3 GSE9996 Organ regeneration in plants is independent of stem cell niche activity
135.1 99.9 GSM252688 Regenerating Stump of Root Tip Cut at 130 mm first and then Recut after 0 hrs Taking 70 mm of Stump (8 dpg) rep2 GSE9996 Organ regeneration in plants is independent of stem cell niche activity
113.5 99.9 GSM252687 Regenerating Stump of Root Tip Cut at 130 mm first and then Recut after 0 hrs Taking 70 mm of Stump (8 dpg) rep1 GSE9996 Organ regeneration in plants is independent of stem cell niche activity
109.1 99.9 GSM284385 Arabidopsis GEP6 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
101.8 99.9 GSM311274 Laser capture microdissected (LCM) embryo proper at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
97.6 99.9 GSM10442 WT Ovule 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
85.1 99.9 GSM133758 Lindsey_1-11_heart-stage-root_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.04 1e-11 71 At1g51960 841624 IQD27 (IQ-domain 27) F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PMFO C.G. S.X.
0.06 7e-10 65 At4g00820 828002 iqd17 (IQ-domain 17) F:calmodulin binding;P:biological_process unknown;C:unknown;POMFVB C.G. S.X.
0.04 2e-4 48 At5g62070 836327 IQD23 (IQ-domain 23) F:calmodulin binding;P:unknown;C:unknown;PMOF C.G. S.X.
0.03 6e-4 46 At2g26180 817158 IQD6 (IQ-domain 6) F:calmodulin binding;P:unknown;C:cellular_component unknown;PMOF C.G. S.X.
0.03 1e-2 42 At3g49380 824100 iqd15 (IQ-domain 15) F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PO C.G. S.X.
0.04 1e-2 42 At1g01110 839394 IQD18 (IQ-domain 18) F:molecular_function unknown;P:unknown;C:mitochondrion;OPMFBV C.G. S.X.
0.02 4e-2 40 At5g13460 831188 IQD11 (IQ-domain 11) F:calmodulin binding;P:biological_process unknown;C:plasma membrane;POFM C.G. S.X.
0.02 2e-1 38 At5g61590 836280 AP2 domain-containing transcription factor family protein encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 9e-1 36 Glycine max HgAffx.10913.1.S1_at CB935541 - - 4e-3 At1g73000 - C.G. S.X.
0.03 1e+0 34 Hordeum vulgare Contig8797_at Contig8797 - - 1e-2 At4g09080 TOC75-IV C.G. S.X.
0.02 1e+0 36 Oryza sativa Os09g0496500 9637.m02816 - - 7e-1 At5g15800 SEP1 (SEPALLATA1) C.G. S.X.
0.04 1e-6 56 Populus trichocarpa PtpAffx.68213.1.S1_s_at CX656626 hypothetical protein - 3e-4 At1g01110 IQD18 (IQ-domain 18) C.G. S.X.
0.02 2e-1 38 Triticum aestivum TaAffx.120386.1.S1_at CA596131 - - 3e-1 At4g02871 unknown protein C.G. S.X.
0.03 7e-1 34 Vitis vinifera 1620168_at CF202067.1 - - 2e+0 At1g30460 CPSF30 C.G. S.X.
0.02 1e+0 34 Zea mays ZmAffx.1187.1.S1_at BE012211 - - 3e+0 At4g29033 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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