CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g10500

Gene name oxidoreductase, 2OG-Fe(II) oxygenase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.22 17.5 At4g10500 826642 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:secondary metabolic process;C:unknown;POBFM S.X. H.G.
0.57 73.8 At5g22555 832318 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.50 65.3 At2g30660 817616 3-hydroxyisobutyryl-coenzyme A hydrolase, putative / CoA-thioester hydrolase, putative F:catalytic activity;P:metabolic process;C:unknown;BOMFPA S.X. H.G.
0.36 43.6 At5g41280 834129 - F:molecular_function unknown;P:biological_process unknown;C:anchored to plasma membrane, anchored to membrane;P S.X. H.G.
0.19 12.7 At5g22570 832320 WRKY38 member of WRKY Transcription Factor; Group III S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
130.0 99.9 GSM184539 Whole roots 2hr KCl control treated then frozen, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
109.6 99.9 GSM184533 Protoplasted root cells 2hr KCl control treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
98.6 99.9 E-MEXP-739-raw-cel-1099467312
91.0 99.9 GSM184538 Whole roots 2hr KCl control treated then frozen, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
88.7 99.9 E-ATMX-25-raw-cel-1441077500
83.0 99.9 E-ATMX-25-raw-cel-1441077482
80.4 99.9 GSM184545 Whole roots 2hr KNO3 treated then frozen, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
78.0 99.9 GSM184552 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
74.5 99.9 GSM133738 Buchanan-Wollaston_A-10-bwoll-Co2_SLD GSE5727 The effects of mutants in stress response pathways on gene expression during senescence
71.1 99.9 GSM184561 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes with KNO3, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.71 3e-132 472 At4g10490 826641 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:secondary metabolic process;C:cellular_component unknown;POBFM C.G. S.X.
0.07 9e-6 52 At5g24530 832524 DMR6 (DOWNY MILDEW RESISTANT 6) Encodes a putative 2OG-Fe(II) oxygenase that is defense-associated but required for susceptibility to downy mildew. C.G. S.X.
0.04 2e-3 44 At3g11180 820289 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, iron ion binding;P:unknown;C:cellular_component unknown;POBFM C.G. S.X.
0.03 3e-2 40 At5g58660 835980 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding;P:biological_process unknown;C:cellular_component unknown;POBFM C.G. S.X.
0.02 3e-2 40 At5g63590 836478 FLS3 (FLAVONOL SYNTHASE 3) F:flavonol synthase activity;P:response to light stimulus, response to sucrose stimulus, flavonoid biosynthetic process;C:cellular_component unknown;POBFM C.G. S.X.
0.02 1e-1 38 At1g48060 841224 F-box family protein F:molecular_function unknown;P:unknown;C:unknown;P C.G. S.X.
0.02 5e-1 36 At5g08640 830765 FLS (FLAVONOL SYNTHASE) Encodes a flavonol synthase that catalyzes formation of flavonols from dihydroflavonols. C.G. S.X.
0.01 5e-1 36 At3g22310 821800 PMH1 (PUTATIVE MITOCHONDRIAL RNA HELICASE 1) Sequence similarity ot DEAD-box RNA helicases. Binds RNA and DNA. Involved in drought, salt and cold stress responses. C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 5e-8 59 Glycine max GmaAffx.92558.1.S1_s_at CF806971 - - 2e-8 At4g10500 oxidoreductase, 2OG-Fe(II) oxygenase family protein C.G. S.X.
0.02 4e+0 32 Hordeum vulgare HX05P09r_at HX05P09r - - 9e-1 At5g60350 unknown protein C.G. S.X.
0.03 4e+0 34 Oryza sativa OsAffx.31614.1.S1_at - - - 0 C.G. S.X.
0.17 5e-8 59 Populus trichocarpa PtpAffx.217753.1.S1_s_at pmrna33142 hypothetical protein - 5e-8 At4g10490 oxidoreductase, 2OG-Fe(II) oxygenase family protein C.G. S.X.
0.02 9e+0 32 Triticum aestivum TaAffx.51957.1.S1_at CA715759 - - 1e+1 At5g25422 unknown protein C.G. S.X.
0.05 1e-5 50 Vitis vinifera 1608379_at CF202029.1 hypothetical protein LOC100253831 - 1e-16 At5g24530 DMR6 (DOWNY MILDEW RESISTANT 6) C.G. S.X.
0.02 1e+1 30 Zea mays ZmAffx.219.1.A1_at AI670227 - - 3e+0 At3g30430 F-box family protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0019748 The chemical reactions and pathways resulting in many of the chemical changes of compounds that are not necessarily required for growth and maintenance of cells, and are often unique to a taxon. In multicellular organisms secondary metabolism is generally carried out in specific cell types, and may be useful for the organism as a whole. In unicellular organisms, secondary metabolism is often used for the production of antibiotics or for the utilization and acquisition of unusual nutrients.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage