CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g10270

Gene name wound-responsive family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g10270 826619 wound-responsive family protein F:molecular_function unknown;P:response to wounding;C:unknown;P S.X. H.G.
1.00 100.0 At1g33055 840201 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.95 97.0 At5g39890 833986 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO S.X. H.G.
0.90 95.1 At4g33560 829495 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.87 93.5 At5g66985 836833 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.84 91.9 At3g02550 821112 LBD41 (LOB DOMAIN-CONTAINING PROTEIN 41) F:unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.80 89.8 At3g10040 820165 transcription factor F:transcription factor activity;P:regulation of transcription;C:unknown;OMFPBVA S.X. H.G.
0.75 86.9 At2g17850 816295 - F:molecular_function unknown;P:aging;C:endomembrane system;BOPAMF S.X. H.G.
0.74 86.1 At5g10040 830868 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.67 81.6 At3g27220 822341 kelch repeat-containing protein F:unknown;P:biological_process unknown;C:Golgi apparatus;MBOVPFA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
181.2 100.0 GSM245474 9 hr Hypoxia Stress IP RNA Rep 1 GSE9719 Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
177.4 100.0 GSM245472 2 hr Hypoxia Stress IP RNA Rep 1 GSE9719 Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
166.7 100.0 GSM245484 9 hr Hypoxia Stress IP RNA Rep 2 GSE9719 Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
147.9 99.9 GSM133773 Lindsey_1-25_torpedo-meristem_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
138.1 99.9 GSM245492 2 hr Hypoxia Stress IP RNA Rep 3 GSE9719 Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
126.0 99.9 GSM245494 9 hr Hypoxia Stress IP RNA Rep 3 GSE9719 Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
116.9 99.9 GSM245482 2 hr Hypoxia Stress IP RNA Rep 2 GSE9719 Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
105.3 99.9 GSM245487 2 hr Hypoxia Stress Total RNA Rep 3 GSE9719 Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
94.4 99.9 GSM245477 2 hr Hypoxia Stress Total RNA Rep 2 GSE9719 Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
90.7 99.9 GSM245489 9 hr Hypoxia Stress Total RNA Rep 3 GSE9719 Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.39 2e-13 75 At4g10265 826618 wound-responsive protein, putative F:molecular_function unknown;P:response to wounding;C:cellular_component unknown;P C.G. S.X.
0.03 3e-2 38 At4g16830 827389 nuclear RNA-binding protein (RGGA) F:RNA binding;P:biological_process unknown;C:nucleus, cytoplasm;MBPOFVA C.G. S.X.
0.02 1e-1 36 At3g21530 821707 endonuclease/exonuclease/phosphatase family protein F:hydrolase activity;P:biological_process unknown;C:mitochondrion;BOPF C.G. S.X.
0.01 5e-1 34 At3g54870 824652 MRH2 (MORPHOGENESIS OF ROOT HAIR 2) Armadillo-repeat containing kinesin-related protein. Plays a role during transition to root-hair tip growth.Mutants have short, branched root hairs and an excess of endoplasmic microtubles. Phenotype suggests ARK1 plays a role in modulating microtubule depolymerization during root hair tip growth. C.G. S.X.
0.03 5e-1 34 At2g17840 816293 ERD7 (EARLY-RESPONSIVE TO DEHYDRATION 7) Identified as drought-inducible gene by differential hybridization. Upregulated by high light, drought, cold and salt stress determined by microarray analysis. C.G. S.X.
0.03 2e+0 32 At5g51100 835183 FSD2 (FE SUPEROXIDE DISMUTASE 2) Fe superoxide dismutase whose mRNA levels are increased in response to exposure to UV-B. C.G. S.X.
0.02 2e+0 32 At5g56010 835699 HSP81-3 a member of heat shock protein 90 (HSP90) gene family. Expressed in all tissues and abundant in root apical meristem, pollen and tapetum. Expression is NOT heat-induced but induced by IAA and NaCl. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.15 3e-3 42 Glycine max GmaAffx.66167.1.S1_at AI973720 - - 2e-3 At4g10270 wound-responsive family protein C.G. S.X.
0.04 4e+0 30 Hordeum vulgare Contig20667_at Contig20667 - - 1e+0 At5g08480 VQ motif-containing protein C.G. S.X.
0.07 6e-2 38 Oryza sativa OsAffx.14412.2.S1_s_at - - - 0 C.G. S.X.
0.22 8e-10 63 Populus trichocarpa PtpAffx.224379.1.S1_s_at pmrna42854 hypothetical protein - 6e-10 At4g10270 wound-responsive family protein C.G. S.X.
0.08 2e+0 32 Triticum aestivum TaAffx.79168.1.S1_at CA720542 - - 2e+0 At3g14362 RTFL10 (ROTUNDIFOLIA LIKE 10) C.G. S.X.
0.07 2e+0 30 Vitis vinifera 1612664_at CB349398 hypothetical protein LOC100266494 - 9e-3 At4g10265 wound-responsive protein, putative C.G. S.X.
0.05 2e-1 34 Zea mays ZmAffx.1134.1.A1_at AW331087 - - 8e-1 At4g10270 wound-responsive family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0009611 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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