Gene omics information

Query gene ID At4g10120
Gene name ATSPS4F
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At4g10120826603ATSPS4FEncodes a protein with putative sucrose-phosphate synthase activity.S.X.H.G.
0.7083.5At5g67370836872unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;OBPS.X.H.G.
0.6680.1At2g19650816484DC1 domain-containing proteinF:unknown;P:intracellular signaling cascade;C:unknown;POMS.X.H.G.
0.6277.3At5g64840836607ATGCN5 (A. THALIANA GENERAL CONTROL NON-REPRESSIBLE 5)member of GCN subfamilyS.X.H.G.
0.6075.7At1g07010837211calcineurin-like phosphoesterase family proteinF:hydrolase activity, protein serine/threonine phosphatase activity;P:biological_process unknown;C:peroxisome;OBPFAVS.X.H.G.
0.6075.7At1g32520840146unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPOS.X.H.G.
0.5873.8At5g13770831222pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POFMABS.X.H.G.
0.5773.8At3g24190822005ABC1 family proteinF:protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;OBMPFAVS.X.H.G.
0.5570.6At4g26850828792VTC2 (vitamin c defective 2)Encodes a novel protein involved in ascorbate biosynthesis, which was shown to catalyze the transfer of GMP from GDP-galactose to a variety of hexose-1-phosphate acceptors. Recessive mutation has a reduced amount of vitamin C, lower level of non-photochemical quenching, and reduced rate of conversion of violaxanthin to zeaxanthin in high light.S.X.H.G.
0.5469.5At5g19850832105hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:unknown;C:unknown;BOMPFAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
124.699.9GSM311294Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
62.199.8E-ATMX-33-raw-cel-1562596264
61.099.8GSM311281Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
57.499.8GSM311282Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
56.699.8GSM237294Shoot Selenate rep1GSE9311Gene expression in roots and shoots of plants grown on selenate
52.999.8GSM260879A2-Greco-WTGSE10322Higher order transcriptional regulation conferred by the bountiful gain of function mutant
48.499.8GSM311293Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
47.299.8GSM284395Arabidopsis GPSc1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
42.499.8GSM237295Shoot Selenate rep2GSE9311Gene expression in roots and shoots of plants grown on selenate
39.499.8E-ATMX-33-raw-cel-1562596310
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.063e-1791At1g04920839382ATSPS3F (sucrose phosphate synthase 3F)Encodes a protein with putative sucrose-phosphate synthase activity.C.G.S.X.
0.061e-1069At5g11110830979ATSPS2F (SUCROSE PHOSPHATE SYNTHASE 2F)Encodes a protein with putative sucrose-phosphate synthase activity.Involved in pollen exine formation.C.G.S.X.
0.094e-757At5g20280832150ATSPS1F (sucrose phosphate synthase 1F)Encodes a protein with putative sucrose-phosphate synthase activity. When the gene was expressed in transgenic tobacco plants, a clear trend for increased SPS activity was noted.C.G.S.X.
0.014e-138At5g04690830347-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPBFAVC.G.S.X.
0.014e-138At5g04700830348-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMBFC.G.S.X.
0.024e-138At3g24770822075CLE41 (CLAVATA3/ESR-RELATED 41)Belongs to a large gene family, called CLE for CLAVATA3/ESR-related, encoding small peptides with conserved carboxyl termini. The C-terminal 12 amino acid sequence of CLE41 is identical to that of a dodeca peptide (TDIF, tracheary element differentiation inhibitory factor) isolated from Arabidopsis and functions as a suppressor of plant stem cell differentiation. TDIF sequence is also identical to the C-terminal 12 amino acids of CLE44 (At4g13195).C.G.S.X.
0.012e+036At5g23940832459EMB3009 (embryo defective 3009)F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:embryonic development ending in seed dormancy;C:cellular_component unknown;PFBOC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.074e-20101Glycine maxGma.2097.1.S1_atAW309489--2e-76At5g20280ATSPS1F (sucrose phosphate synthase 1F)C.G.S.X.
0.062e-757Hordeum vulgareContig7277_atContig7277--3e-8At5g11110ATSPS2F (SUCROSE PHOSPHATE SYNTHASE 2F)C.G.S.X.
0.072e-450Oryza sativaOs01g0919400AK121341.1-Sucrose-phosphate synthase (EC 2.4.1.14)(UDP-glucose-fructose- phosphate glucosyltransferase)7e-28At1g04920ATSPS3F (sucrose phosphate synthase 3F)C.G.S.X.
0.516e-78293Populus trichocarpaPtpAffx.211245.1.S1_atpmrna22073hypothetical protein-4e-78At4g10120ATSPS4FC.G.S.X.
0.064e-448Triticum aestivumTa.3972.2.S1_atBJ248938Sucrose-phosphate synthase-3e-12At1g04920ATSPS3F (sucrose phosphate synthase 3F)C.G.S.X.
0.101e-757Vitis vinifera1614674_atBQ797294sucrose-phosphate synthase 1-1e-7At4g10120ATSPS4FC.G.S.X.
0.062e-448Zea maysZm.26.1.A1_atM97550.1sucrose phosphate synthase1-1e-19At1g04920ATSPS3F (sucrose phosphate synthase 3F)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0005985The chemical reactions and pathways involving sucrose, the disaccharide fructofuranosyl-glucopyranoside.
LGO:0009058The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00022Link to KaPPA-View 4Biosynthesis and metabolism of sucrose
00359Link to KaPPA-View 4Glucosyltransferase



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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