Gene omics information

Query gene ID At4g09610
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.8290.9At4g09610826546GASA2 (GAST1 PROTEIN HOMOLOG 2)F:molecular_function unknown;P:response to gibberellin stimulus;C:endomembrane system;PS.X.H.G.
0.8994.6At5g01670831701aldose reductase, putativeF:oxidoreductase activity;P:oxidation reduction;C:unknown;BMOFPAS.X.H.G.
0.8793.5At5g55750835669hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBVAS.X.H.G.
0.8793.5At1g27990839692unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.8693.1At2g19900816509ATNADP-ME1 (NADP-malic enzyme 1)The malic enzyme (EC encoded by AtNADP-ME1 is expressed in response to developmental and cell-specific signals.S.X.H.G.
0.8391.4At1g02700839492unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PMFOS.X.H.G.
0.8190.4At4g10020826593AtHSD5 (hydroxysteroid dehydrogenase 5)F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPAVS.X.H.G.
0.8089.8At2g19320816449unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.8089.8At3g11050820276ATFER2 (ferritin 2)F:oxidoreductase activity, ferric iron binding, binding, transition metal ion binding;P:response to oxidative stress, cellular iron ion homeostasis, response to abscisic acid stimulus, iron ion transport;C:chloroplast;MBPOAFS.X.H.G.
0.7989.1At4g09600826545GASA3 (GAST1 PROTEIN HOMOLOG 3)One of GASA gene family which is related to a GA-stimulated transcript (GAST) from tomato.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
827.5100.0GSM10456WT Post-Mature Green Seed 2GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
489.9100.0GSM133303RIKEN-NAKABAYASHI1AGSE5700AtGenExpress: Effect of ABA during seed imbibition
483.0100.0GSM131706ATGE_84_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
425.5100.0GSM131708ATGE_84_DGSE5634AtGenExpress: Developmental series (siliques and seeds)
406.7100.0GSM131707ATGE_84_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
339.0100.0GSM131705ATGE_83_CGSE5634AtGenExpress: Developmental series (siliques and seeds)
326.2100.0GSM131704ATGE_83_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
323.3100.0GSM131703ATGE_83_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
273.8100.0GSM10454WT Post-Mature Green Seed 1GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
243.3100.0GSM133304RIKEN-NAKABAYASHI1BGSE5700AtGenExpress: Effect of ABA during seed imbibition
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.861e-69262At4g09600826545GASA3 (GAST1 PROTEIN HOMOLOG 3)One of GASA gene family which is related to a GA-stimulated transcript (GAST) from tomato.C.G.S.X.
0.059e-340At1g70810843418C2 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MPFOC.G.S.X.
0.021e-136At5g16820831545HSF3 (HEAT SHOCK FACTOR 3)Encodes a putative transcription factor whose expression is not induced by heat but whose stable overexpression leads to expression of HSP. Required early in the stress response for transient expression of heat shock genes.C.G.S.X.
0.016e-134At5g56220835721nucleoside-triphosphatase/ nucleotide bindingF:nucleoside-triphosphatase activity, nucleotide binding;P:unknown;C:chloroplast;OPMBFVAC.G.S.X.
0.016e-134At3g16030820848CES101 (CALLUS EXPRESSION OF RBCS 101)F:in 7 functions;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAC.G.S.X.
0.032e+032At5g51100835183FSD2 (FE SUPEROXIDE DISMUTASE 2)Fe superoxide dismutase whose mRNA levels are increased in response to exposure to UV-B.C.G.S.X.
0.022e+032At5g20990832224B73Involved in molybdenum cofactor (Moco) biosynthesis, inserting Mo into Molybdopterin. sir loss-of-function mutants are resistant to sirtinol, a modulator of auxin signaling.C.G.S.X.
0.022e+032At5g22610832324F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.091e-240Glycine maxGmaAffx.54479.2.A1_s_atCD405056--1e-2At4g09610GASA2 (GAST1 PROTEIN HOMOLOG 2)C.G.S.X.
0.043e-134Hordeum vulgareContig25897_atContig25897--3e-1At4g18070unknown proteinC.G.S.X.
0.054e+032Oryza sativaOsAffx.29055.1.S1_at---0C.G.S.X.
0.068e-134Populus trichocarpaPtpAffx.210571.1.S1_atpmrna20734hypothetical protein-6e-1At4g09610GASA2 (GAST1 PROTEIN HOMOLOG 2)C.G.S.X.
0.042e+032Triticum aestivumTaAffx.128418.98.S1_atCA732416--1e+0At5g51650unknown proteinC.G.S.X.
0.043e+030Vitis vinifera1606560_atCF405210--3e+0At5g12360unknown proteinC.G.S.X.
0.042e+128Zea maysZmAffx.1092.1.S1_s_atAW066155--1e-107Atcg00490-C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0009739A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gibberellin stimulus.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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