Gene omics information

Query gene ID At4g09600
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At4g09600826545GASA3 (GAST1 PROTEIN HOMOLOG 3)One of GASA gene family which is related to a GA-stimulated transcript (GAST) from tomato.S.X.H.G.
0.9697.3At3g11050820276ATFER2 (ferritin 2)F:oxidoreductase activity, ferric iron binding, binding, transition metal ion binding;P:response to oxidative stress, cellular iron ion homeostasis, response to abscisic acid stimulus, iron ion transport;C:chloroplast;MBPOAFS.X.H.G.
0.9396.4At5g22470832308NAD+ ADP-ribosyltransferaseF:NAD+ ADP-ribosyltransferase activity;P:protein amino acid ADP-ribosylation;C:intracellular, nucleus;MOPFBVS.X.H.G.
0.9095.1At3g50980824262XERO1 (DEHYDRIN XERO 1)F:molecular_function unknown;P:response to water, response to stress;C:cellular_component unknown;PMS.X.H.G.
0.8994.6At2g19900816509ATNADP-ME1 (NADP-malic enzyme 1)The malic enzyme (EC encoded by AtNADP-ME1 is expressed in response to developmental and cell-specific signals.S.X.H.G.
0.8894.0At1g27990839692unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.8793.5At1g02700839492unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PMFOS.X.H.G.
0.8693.1At3g12960820482unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.8693.1At4g10020826593AtHSD5 (hydroxysteroid dehydrogenase 5)F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPAVS.X.H.G.
0.8592.4At4g21020827849late embryogenesis abundant domain-containing protein / LEA domain-containing proteinF:unknown;P:embryonic development ending in seed dormancy;C:unknown;OMBPFVAS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
432.8100.0GSM133117RIKEN-YAMAUCHI1AGSE5687AtGenExpress: Different temperature treatment of seeds
300.5100.0GSM131706ATGE_84_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
294.7100.0GSM10456WT Post-Mature Green Seed 2GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
293.3100.0GSM131703ATGE_83_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
290.2100.0GSM131707ATGE_84_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
276.2100.0GSM133303RIKEN-NAKABAYASHI1AGSE5700AtGenExpress: Effect of ABA during seed imbibition
275.9100.0GSM131705ATGE_83_CGSE5634AtGenExpress: Developmental series (siliques and seeds)
249.0100.0GSM131704ATGE_83_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
244.0100.0GSM153927ahg1-1 rep2GSE6638Expression data of germinating ahg1, ahg3 and WT seedling in the presence of ABA
243.6100.0GSM131708ATGE_84_DGSE5634AtGenExpress: Developmental series (siliques and seeds)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.861e-69262At4g09610826546GASA2 (GAST1 PROTEIN HOMOLOG 2)F:molecular_function unknown;P:response to gibberellin stimulus;C:endomembrane system;PC.G.S.X.
0.029e-340At3g09520820109ATEXO70H4 (exocyst subunit EXO70 family protein H4)A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.C.G.S.X.
0.051e-136At5g14920831344gibberellin-regulated family proteinF:unknown;P:response to gibberellin stimulus;C:endomembrane system;MBOFPVAC.G.S.X.
0.036e-134At3g03660821196WOX11 (WUSCHEL related homeobox 11)Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box.C.G.S.X.
0.026e-134At3g17570821023F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POC.G.S.X.
0.046e-134At2g47050819319invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PC.G.S.X.
0.012e+032At5g64030836524dehydration-responsive protein-relatedF:unknown;P:biological_process unknown;C:Golgi apparatus;OMBFPVAC.G.S.X.
0.032e+032At5g50470835115NF-YC7 (NUCLEAR FACTOR Y, SUBUNIT C7)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, intracellular;MPFOC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.061e-240Glycine maxGma.4565.2.S1_atAW348176--3e-2At4g09600GASA3 (GAST1 PROTEIN HOMOLOG 3)C.G.S.X.
0.044e+030Hordeum vulgarerbags1d24_atrbags1d24--7e-20At5g56030HSP81-2 (HEAT SHOCK PROTEIN 81-2)C.G.S.X.
Os03g07988010.044e+0Oryza sativaOs03g07987019631.m05746--1e+0At3g04640glycine-rich proteinC.G.S.X.
0.038e-134Populus trichocarpaPtpAffx.212328.1.S1_atpmrna24173hypothetical protein-2e-16At4g10030hydrolase, alpha/beta fold family proteinC.G.S.X.
0.066e-134Triticum aestivumTa.15166.1.S1_atCA692101--6e-1At4g09600GASA3 (GAST1 PROTEIN HOMOLOG 3)C.G.S.X.
0.043e-340Vitis vinifera1609893_atBQ798416hypothetical protein LOC100266028-6e-3At2g18420-C.G.S.X.
0.034e+030Zea maysZm.8862.1.A1_atBM268559--3e-1At4g14110COP9 (CONSTITUTIVE PHOTOMORPHOGENIC 9)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
SGO:0009739A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gibberellin stimulus.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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