CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g09600

Gene name GASA3 (GAST1 PROTEIN HOMOLOG 3)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g09600 826545 GASA3 (GAST1 PROTEIN HOMOLOG 3) One of GASA gene family which is related to a GA-stimulated transcript (GAST) from tomato. S.X. H.G.
0.96 97.3 At3g11050 820276 ATFER2 (ferritin 2) F:oxidoreductase activity, ferric iron binding, binding, transition metal ion binding;P:response to oxidative stress, cellular iron ion homeostasis, response to abscisic acid stimulus, iron ion transport;C:chloroplast;MBPOAF S.X. H.G.
0.93 96.4 At5g22470 832308 NAD+ ADP-ribosyltransferase F:NAD+ ADP-ribosyltransferase activity;P:protein amino acid ADP-ribosylation;C:intracellular, nucleus;MOPFBV S.X. H.G.
0.90 95.1 At3g50980 824262 XERO1 (DEHYDRIN XERO 1) F:molecular_function unknown;P:response to water, response to stress;C:cellular_component unknown;PM S.X. H.G.
0.89 94.6 At2g19900 816509 ATNADP-ME1 (NADP-malic enzyme 1) The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME1 is expressed in response to developmental and cell-specific signals. S.X. H.G.
0.88 94.0 At1g27990 839692 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.87 93.5 At1g02700 839492 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PMFO S.X. H.G.
0.86 93.1 At3g12960 820482 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.86 93.1 At4g10020 826593 AtHSD5 (hydroxysteroid dehydrogenase 5) F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPAV S.X. H.G.
0.85 92.4 At4g21020 827849 late embryogenesis abundant domain-containing protein / LEA domain-containing protein F:unknown;P:embryonic development ending in seed dormancy;C:unknown;OMBPFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
432.8 100.0 GSM133117 RIKEN-YAMAUCHI1A GSE5687 AtGenExpress: Different temperature treatment of seeds
300.5 100.0 GSM131706 ATGE_84_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
294.7 100.0 GSM10456 WT Post-Mature Green Seed 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
293.3 100.0 GSM131703 ATGE_83_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
290.2 100.0 GSM131707 ATGE_84_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
276.2 100.0 GSM133303 RIKEN-NAKABAYASHI1A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
275.9 100.0 GSM131705 ATGE_83_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
249.0 100.0 GSM131704 ATGE_83_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
244.0 100.0 GSM153927 ahg1-1 rep2 GSE6638 Expression data of germinating ahg1, ahg3 and WT seedling in the presence of ABA
243.6 100.0 GSM131708 ATGE_84_D GSE5634 AtGenExpress: Developmental series (siliques and seeds)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.86 1e-69 262 At4g09610 826546 GASA2 (GAST1 PROTEIN HOMOLOG 2) F:molecular_function unknown;P:response to gibberellin stimulus;C:endomembrane system;P C.G. S.X.
0.02 9e-3 40 At3g09520 820109 ATEXO70H4 (exocyst subunit EXO70 family protein H4) A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. C.G. S.X.
0.05 1e-1 36 At5g14920 831344 gibberellin-regulated family protein F:unknown;P:response to gibberellin stimulus;C:endomembrane system;MBOFPVA C.G. S.X.
0.03 6e-1 34 At3g03660 821196 WOX11 (WUSCHEL related homeobox 11) Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box. C.G. S.X.
0.02 6e-1 34 At3g17570 821023 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO C.G. S.X.
0.04 6e-1 34 At2g47050 819319 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.01 2e+0 32 At5g64030 836524 dehydration-responsive protein-related F:unknown;P:biological_process unknown;C:Golgi apparatus;OMBFPVA C.G. S.X.
0.03 2e+0 32 At5g50470 835115 NF-YC7 (NUCLEAR FACTOR Y, SUBUNIT C7) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, intracellular;MPFO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 1e-2 40 Glycine max Gma.4565.2.S1_at AW348176 - - 3e-2 At4g09600 GASA3 (GAST1 PROTEIN HOMOLOG 3) C.G. S.X.
0.04 4e+0 30 Hordeum vulgare rbags1d24_at rbags1d24 - - 7e-20 At5g56030 HSP81-2 (HEAT SHOCK PROTEIN 81-2) C.G. S.X.
Os03g0798801 0.04 4e+0 Oryza sativa Os03g0798701 9631.m05746 - - 1e+0 At3g04640 glycine-rich protein C.G. S.X.
0.03 8e-1 34 Populus trichocarpa PtpAffx.212328.1.S1_at pmrna24173 hypothetical protein - 2e-16 At4g10030 hydrolase, alpha/beta fold family protein C.G. S.X.
0.06 6e-1 34 Triticum aestivum Ta.15166.1.S1_at CA692101 - - 6e-1 At4g09600 GASA3 (GAST1 PROTEIN HOMOLOG 3) C.G. S.X.
0.04 3e-3 40 Vitis vinifera 1609893_at BQ798416 hypothetical protein LOC100266028 - 6e-3 At2g18420 - C.G. S.X.
0.03 4e+0 30 Zea mays Zm.8862.1.A1_at BM268559 - - 3e-1 At4g14110 COP9 (CONSTITUTIVE PHOTOMORPHOGENIC 9) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0009739 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gibberellin stimulus.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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