CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g09040

Gene name RNA recognition motif (RRM)-containing protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g09040 826483 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:chloroplast stroma, chloroplast;MPFOBA S.X. H.G.
0.65 79.6 At2g26550 817196 HO2 (HEME OXYGENASE 2) encodes a heme oxygenase that catalyzes the oxidation of heme to biliverdin IXalpha, CO and Fe(2+), a committed step in the biosynthesis of the phytochrome chromophore phytochromobilin. S.X. H.G.
0.59 74.7 At5g53860 835467 emb2737 (embryo defective 2737) F:unknown;P:embryonic development ending in seed dormancy;C:chloroplast;P S.X. H.G.
0.58 73.8 At3g27750 822397 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P S.X. H.G.
0.58 73.8 At4g20960 827843 cytidine/deoxycytidylate deaminase family protein encodes diaminohydroxyphosphoribosylaminopyrimidine deaminase catalyzing the second step in the riboflavin biosynthesis S.X. H.G.
0.56 73.0 At1g60600 842354 ABC4 (ABERRANT CHLOROPLAST DEVELOPMENT 4) Encodes a protein similar to 1,4-dihydroxy-2-naphthoic acid phytyltransferase involved in phylloquinone and plastoquinone biosynthesis. Mutants are pale green and heterotrophic with defects in photosynthetic electron transport. S.X. H.G.
0.56 73.0 At5g52110 835287 HCF208 (HIGH CHLOROPHYLL FLUORESCENCE 208) F:molecular_function unknown;P:cytochrome b6f complex assembly;C:chloroplast;BPO S.X. H.G.
0.56 73.0 At1g32200 840112 ATS1 Encodes a chloroplast glycerol-3-phosphate acyltransferase.Involved in the biosynthesis of chloroplast phosphatidylglycerol. S.X. H.G.
0.55 70.6 At2g45770 819185 CPFTSY chloroplast SRP receptor homolog, alpha subunit CPFTSY. Required for LHCP integration into isolated thylakoids. S.X. H.G.
0.55 70.6 At4g35440 829696 CLC-E (CHLORIDE CHANNEL E) Enclodes a choride channel protein that is localized to the thlakoid membrane. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
87.4 99.9 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
44.9 99.8 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
36.2 99.7 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
32.8 99.7 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
31.5 99.7 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
29.3 99.7 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
29.0 99.7 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
28.7 99.7 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
27.4 99.7 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
27.2 99.7 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes

Paralogous genes

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HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 3e-2 40 At5g40740 834074 unknown protein F:unknown;P:biological_process unknown;C:unknown;OBFMP C.G. S.X.
0.03 3e-2 40 At5g04340 830313 ZAT6 (ZINC FINGER OF ARABIDOPSIS THALIANA 6) putative c2h2 zinc finger transcription factor mRNA, C.G. S.X.
0.02 1e-1 38 At3g28670 822497 oxidoreductase/ zinc ion binding F:oxidoreductase activity, zinc ion binding;P:biological_process unknown;C:plasma membrane;MPO C.G. S.X.
0.01 5e-1 36 At4g04340 825754 early-responsive to dehydration protein-related / ERD protein-related F:unknown;P:unknown;C:plasma membrane;FPMOB C.G. S.X.
0.01 5e-1 36 At4g28370 828953 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:biological_process unknown;C:endomembrane system;MPOFV C.G. S.X.
0.02 5e-1 36 At3g61550 825328 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 2e-7 57 Glycine max Gma.667.1.S1_at CD414413 - - 1e-7 At4g09040 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.03 3e+0 32 Hordeum vulgare HVSMEb0002H03r2_s_at HVSMEb0002H03r2 - - 5e-5 At3g24890 ATVAMP728 C.G. S.X.
0.03 9e-1 36 Oryza sativa Os05g0397300 AK062621.1 - Conserved hypothetical protein 1e+0 At5g28610 - C.G. S.X.
0.13 3e-6 54 Populus trichocarpa PtpAffx.980.1.S1_at CV266657 hypothetical protein - 1e-5 At4g09040 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.02 2e+0 34 Triticum aestivum Ta.7836.1.A1_at BQ160775 - - 1e+0 At4g17900 zinc-binding family protein C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1620712_at CD713937 - - 2e-39 At1g07830 ribosomal protein L29 family protein C.G. S.X.
0.02 3e+0 32 Zea mays Zm.9058.1.A1_at BM266530 - - 5e+0 At5g61030 GR-RBP3 (glycine-rich RNA-binding protein 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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