CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g08850

Gene name kinase

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.25 22.6 At4g08850 826456 kinase F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane, membrane;MPOBFVA S.X. H.G.
0.36 43.6 At3g19010 821434 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:flavonol synthase activity, oxidoreductase activity, iron ion binding;P:flavonoid biosynthetic process;C:cellular_component unknown;POBFM S.X. H.G.
0.33 38.1 At4g38550 830012 - F:unknown;P:unknown;C:chloroplast;MFPOBVA S.X. H.G.
0.21 15.8 At5g23490 832415 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMBF S.X. H.G.
0.20 14.4 At1g13210 837881 ACA.l (autoinhibited Ca2+/ATPase II) F:calmodulin binding, ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism;P:metabolic process, phospholipid transport, ATP biosynthetic process;C:plasma membrane;MBOFPA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
39.6 99.8 E-NASC-76-raw-cel-1359878951
31.8 99.7 E-NASC-76-raw-cel-1359879106
31.8 99.7 GSM142852 MG001_ATH1_A5-Torres-2N3 GSE6176 Impact of Type III effectors on plant defense responses
31.5 99.7 E-NASC-76-raw-cel-1359879158
31.3 99.7 E-NASC-76-raw-cel-1359879184
30.4 99.7 GSM131329 AtGen_6-3621_Saltstress-Roots-24.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
29.8 99.7 E-MEXP-1094-raw-cel-1379507273
27.7 99.7 GSM128685 Underwood_1-38_E.coli-TUV86-2-fliC-10e8-7h_Rep1_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
27.0 99.7 E-NASC-76-raw-cel-1359879132
26.4 99.7 E-MEXP-1094-raw-cel-1379507313
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.28 2e-34 149 At1g35710 840475 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.01 2e-6 56 At1g09970 837531 LRR XI-23 F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid autophosphorylation, transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;MPOBFVA C.G. S.X.
0.02 4e-4 48 At1g17230 838294 ATP binding / protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.01 2e-3 46 At5g46330 834676 FLS2 (FLAGELLIN-SENSITIVE 2) Encodes a leucine-rich repeat serine/threonine protein kinase that is expressed ubiquitously. FLS2 is involved in MAP kinase signalling relay involved in innate immunity. Essential in the perception of flagellin, a potent elicitor of the defense response. FLS2 is directed for degradation by the bacterial ubiquitin ligase AvrPtoB. C.G. S.X.
0.01 6e-3 44 At5g58150 835927 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane, vacuole;PMBOFVA C.G. S.X.
0.01 6e-3 44 At3g28040 822428 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.01 6e-3 44 At2g33170 817878 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 9e-3 44 Glycine max GmaAffx.87108.1.S1_at BM085777 - - 3e-1 At3g24093 - C.G. S.X.
0.01 5e-2 40 Hordeum vulgare Contig18085_at Contig18085 - - 4e-11 At3g56370 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
0.04 3e-3 46 Oryza sativa Os02g0553000 9630.m03316 - Protein kinase domain containing protein 1e-3 At4g08850 kinase C.G. S.X.
0.04 2e-6 56 Populus trichocarpa PtpAffx.224953.1.S1_x_at pmrna43894 hypothetical protein - 2e-6 At4g08850 kinase C.G. S.X.
0.01 1e-1 40 Triticum aestivum Ta.9701.1.S1_at CD897812 - - 3e-11 At3g56370 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
0.02 2e-3 44 Vitis vinifera 1620324_at CB002490 hypothetical protein LOC100243949 - 5e-3 At1g69790 protein kinase, putative C.G. S.X.
0.01 3e-3 44 Zea mays Zm.12926.1.A1_at CF634151 hypothetical protein LOC100278966 - 3e-6 At5g02800 protein kinase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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