CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g08480

Gene name MAPKKK9

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.17 10.2 At4g08480 826407 MAPKKK9 member of MEKK subfamily S.X. H.G.
0.20 14.4 At5g11250 830995 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, chloroplast;PMOBFAV S.X. H.G.
0.18 11.4 At5g56250 835724 HAP8 (HAPLESS 8) F:unknown;P:unknown;C:chloroplast;MPOFB S.X. H.G.
0.08 2.3 At2g43850 818989 ankyrin protein kinase, putative (APK1) F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:regulation of signal transduction, protein amino acid phosphorylation;C:chloroplast;MOPBFVA S.X. H.G.
0.05 1.1 At1g12220 837775 RPS5 (RESISTANT TO P. SYRINGAE 5) Resistance gene, mediates resistance against the bacterial pathogen Pseudomonas syringae. Contains a putative nucleotide binding site composed of kinase-1a (or P-loop), kinase-2a, and putative kinase-3a domains, 13 imperfect leucine-rich repeats, a potential leucine zipper, and two uncharacterized motifs that are well conserved in products of previously isolated R genes. Confers resistance to Pseudomonas syringae strains that express avrPphB. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
108.3 99.9 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
96.3 99.9 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
81.3 99.9 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
78.0 99.9 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
78.0 99.9 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
74.6 99.9 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
71.1 99.9 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
52.8 99.8 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
52.5 99.8 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
50.7 99.8 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.67 0 1227 At4g08500 826409 MEKK1 (MAP KINASE KINASE KINASE 1) Member of MAP Kinase Kinase gene family. Mediates cold, salt, cadmium and wounding stress signalling. Phosphorylates AtMEK1. C.G. S.X.
0.46 0 847 At4g08470 826406 MAPKKK10 member of MEKK subfamily C.G. S.X.
0.17 9e-131 468 At4g12020 826810 WRKY19 member of MEKK subfamily C.G. S.X.
0.01 2e-2 42 At5g40440 834042 ATMKK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 3) encodes a mitogen-activated protein kinase kinase C.G. S.X.
0.01 2e-2 42 At4g23190 828418 CRK11 (CYSTEINE-RICH RLK11) Encodes putative receptor-like protein kinase that is induced by the soil-borne vascular bacteria, Ralstonia solanacearum. Naming convention from Chen et al 2003 (PMID 14756307) C.G. S.X.
0.01 3e-1 38 At5g41000 834102 YSL4 (YELLOW STRIPE LIKE 4) Arabidopsis thaliana metal-nicotianamine transporter YSL4 C.G. S.X.
0.01 3e-1 38 At3g50270 824189 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:unknown;PF C.G. S.X.
0.01 3e-1 38 At3g01920 821220 yrdC family protein F:unknown;P:biological_process unknown;C:unknown;BOAMFP C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 4e-7 57 Glycine max GmaAffx.80668.1.S1_at BE347984 - - 1e-7 At4g08500 MEKK1 (MAP KINASE KINASE KINASE 1) C.G. S.X.
0.03 6e-1 36 Hordeum vulgare Contig14854_at Contig14854 - - 8e-1 At4g08480 MAPKKK9 C.G. S.X.
0.03 9e-3 44 Oryza sativa Os04g0339800 9632.m02550 - Protein kinase family protein 2e-1 At4g08470 MAPKKK10 C.G. S.X.
0.05 4e-4 48 Populus trichocarpa PtpAffx.222267.1.S1_at pmrna39568 hypothetical protein - 4e-7 At4g08470 MAPKKK10 C.G. S.X.
0.03 1e+0 36 Triticum aestivum Ta.4348.2.S1_at CA497595 - - 8e-1 At4g08480 MAPKKK9 C.G. S.X.
0.04 4e-13 75 Vitis vinifera 1617387_at BQ793951 - - 3e-15 At4g08500 MEKK1 (MAP KINASE KINASE KINASE 1) C.G. S.X.
0.02 5e-1 36 Zea mays ZmAffx.55.1.A1_at AI665054 - - 3e+0 At1g25280 AtTLP10 (TUBBY LIKE PROTEIN 10) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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