CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g08470

Gene name MAPKKK10

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.38 46.7 At4g08470 826406 MAPKKK10 member of MEKK subfamily S.X. H.G.
0.67 81.6 At2g46430 819251 ATCNGC3 (CYCLIC NUCLEOTIDE GATED CHANNEL 3) cyclic nucleotide gated channel (CNGC4), downstream component of the signaling pathways leading to HR/resistance S.X. H.G.
0.59 74.7 At1g65790 842890 ARK1 (A. THALIANA RECEPTOR KINASE 1) An alternatively spliced gene that encodes a functional transmembrane receptor serine/threonine kinase, alternate form may not have transmembrane domain. S.X. H.G.
0.56 73.0 At4g23130 828412 CRK5 (CYSTEINE-RICH RLK5) Encodes a receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307) S.X. H.G.
0.48 62.5 At1g21270 838723 WAK2 cytoplasmic serine/threonine protein kinase induced by salicylic acid. mutant plants exhibit a loss of cell expansion and dependence on sugars and salts for seedling growth, affecting the expression and activity of vacuolar invertase. S.X. H.G.
0.48 62.5 At5g60900 836211 RLK1 (RECEPTOR-LIKE PROTEIN KINASE 1) Encodes a receptor-like protein kinase. S.X. H.G.
0.43 55.3 At1g21250 838721 WAK1 (CELL WALL-ASSOCIATED KINASE) cell wall-associated kinase, may function as a signaling receptor of extracellular matrix component. S.X. H.G.
0.34 39.8 At5g39030 833895 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.29 30.3 At4g23260 828425 ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:response to abscisic acid stimulus;C:endomembrane system;MPOBFVA S.X. H.G.
0.23 19.3 At5g36930 833662 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
31.8 99.7 E-MEXP-1094-raw-cel-1379507193
26.7 99.7 E-MEXP-509-raw-cel-829148666
24.9 99.6 GSM128648 Underwood_1-1_Cor-10e6-24h_Rep1_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
23.0 99.6 E-MEXP-1094-raw-cel-1379507233
23.0 99.6 GSM128649 Underwood_1-2_Cor-10e6-24h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
22.6 99.6 GSM128662 Underwood_1-15_Cor-5x10e7-10h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
21.3 99.6 GSM128673 Underwood_1-25_hrpA-10e8-7h_Rep1_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
20.1 99.6 GSM128654 Underwood_1-7_DC3000-10e6-24h_Rep1_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
19.6 99.6 GSM131537 ATGE_25_A GSE5630 AtGenExpress: Developmental series (leaves)
17.1 99.5 GSM131539 ATGE_25_C GSE5630 AtGenExpress: Developmental series (leaves)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.54 0 963 At4g08500 826409 MEKK1 (MAP KINASE KINASE KINASE 1) Member of MAP Kinase Kinase gene family. Mediates cold, salt, cadmium and wounding stress signalling. Phosphorylates AtMEK1. C.G. S.X.
0.46 0 847 At4g08480 826407 MAPKKK9 member of MEKK subfamily C.G. S.X.
0.15 4e-120 432 At4g12020 826810 WRKY19 member of MEKK subfamily C.G. S.X.
0.01 2e-4 48 At5g40440 834042 ATMKK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 3) encodes a mitogen-activated protein kinase kinase C.G. S.X.
0.01 3e-3 44 At3g06030 819774 ANP3 (ARABIDOPSIS NPK1-RELATED PROTEIN KINASE 3) NPK1-related protein kinase 3 C.G. S.X.
0.01 5e-2 40 At4g23190 828418 CRK11 (CYSTEINE-RICH RLK11) Encodes putative receptor-like protein kinase that is induced by the soil-borne vascular bacteria, Ralstonia solanacearum. Naming convention from Chen et al 2003 (PMID 14756307) C.G. S.X.
0.01 2e-1 38 At3g27600 822382 RNA binding F:RNA binding;P:RNA processing;C:cellular_component unknown;MPFO C.G. S.X.
0.01 2e-1 38 At2g30040 817555 MAPKKK14 member of MEKK subfamily C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 8e-8 59 Glycine max GmaAffx.80668.1.S1_at BE347984 - - 1e-7 At4g08500 MEKK1 (MAP KINASE KINASE KINASE 1) C.G. S.X.
0.03 2e+0 34 Hordeum vulgare Contig14854_at Contig14854 - - 8e-1 At4g08480 MAPKKK9 C.G. S.X.
0.02 3e-2 42 Oryza sativa Os02g0769750 9630.m05236 - - 7e-1 At1g54960 ANP2 C.G. S.X.
0.07 3e-7 57 Populus trichocarpa PtpAffx.58436.1.S1_at CK095548 hypothetical protein - 3e-12 At4g08500 MEKK1 (MAP KINASE KINASE KINASE 1) C.G. S.X.
0.03 1e-2 42 Triticum aestivum Ta.23203.1.S1_at CD905906 - - 5e-5 At4g08500 MEKK1 (MAP KINASE KINASE KINASE 1) C.G. S.X.
0.05 2e-8 59 Vitis vinifera 1617387_at BQ793951 - - 3e-15 At4g08500 MEKK1 (MAP KINASE KINASE KINASE 1) C.G. S.X.
0.02 6e+0 32 Zea mays Zm.5053.1.A1_at CO533193 - - 2e-7 At5g66850 MAPKKK5 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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