Gene omics information

Query gene ID At4g08320
Gene name tetratricopeptide repeat (TPR)-containing protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At4g08320826386tetratricopeptide repeat (TPR)-containing proteinF:binding;P:biological_process unknown;C:cellular_component unknown;OMBPFAS.X.H.G.
0.3846.7At2g21230816660bZIP family transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, chloroplast;OPMBFAVS.X.H.G.
0.3745.0At1g65020842810-F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum, plasma membrane;PBMOS.X.H.G.
0.3541.6At3g13200820510EMB2769 (EMBRYO DEFECTIVE 2769)F:molecular_function unknown;P:nuclear mRNA splicing, via spliceosome;C:spliceosome;MOFPBVAS.X.H.G.
0.3541.6At2g45140819122PVA12 (PLANT VAP HOMOLOG 12)Encodes a Plant VAMP-Associated protein that localizes to the ER and binds to the sitosterol-binding protein ORP3a. The WFDE motif in ORP3a appears to be important for this direct interaction. Mutation of this motif causes ORP3a to relocalize to the Golgi and cytosol. The interaction between PVA12 and ORP3a does not appear to be sterol-dependent.S.X.H.G.
0.3439.8At4g38930830048ubiquitin fusion degradation UFD1 family proteinF:molecular_function unknown;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;OFMPS.X.H.G.
0.3235.7At4g20330827781transcription initiation factor-relatedF:RNA polymerase II transcription factor activity;P:transcription initiation from RNA polymerase II promoter;C:transcription factor TFIIE complex;MFPOS.X.H.G.
0.3235.7At5g47080834754CKB1Regulatory subunit beta of casein kinase II. purified CKB1 resulted in up 100-fold stimulation of casein kinase activity compared with the CKA1 activity alone. Forms a tetrameric complex with CKA1 (CKA1(2)CKB1(2)).S.X.H.G.
0.3133.8At5g50230835088nucleotide bindingF:nucleotide binding;P:multicellular organismal development;C:heterotrimeric G-protein complex;MFOBPAVS.X.H.G.
0.3133.8At3g06540819832GDP dissociation inhibitor family protein / Rab GTPase activator family proteinF:RAB GDP-dissociation inhibitor activity;P:intracellular protein transport, regulation of GTPase activity, protein transport;C:cellular_component unknown;MFOPBS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
58.899.8GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
34.299.7GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
32.799.7GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
32.699.7GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
30.899.7GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
30.499.7GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
30.299.7GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
30.299.7GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
28.499.7GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
28.099.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.014e-240At2g40720818667pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:unknown;C:cellular_component unknown;POMFBC.G.S.X.
0.014e-240At1g30610839941emb2279 (embryo defective 2279)F:unknown;P:embryonic development ending in seed dormancy;C:unknown;POMFBAC.G.S.X.
0.024e-240At1g17145838285protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;FPOMC.G.S.X.
0.022e-138At5g37860833764copper-binding family proteinF:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:cellular_component unknown;POBFMC.G.S.X.
0.022e-138At4g36100829766-F:unknown;P:vesicle-mediated transport, vesicle docking during exocytosis;C:peroxisome;PFOMC.G.S.X.
0.022e-138At1g31040839990unknown proteinF:unknown;P:biological_process unknown;C:unknown;PC.G.S.X.
0.016e-136At5g55500835643XYLT (ARABIDOPSIS THALIANA BETA-1,2-XYLOSYLTRANSFERASE)Encodes a beta-1,2-xylosyltransferase that is glycosylated at two positions.C.G.S.X.
0.016e-136At5g43420834362zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.137e-1789Glycine maxGmaAffx.80824.1.S1_atBQ297296--3e-17At4g08320tetratricopeptide repeat (TPR)-containing proteinC.G.S.X.
0.023e-136Hordeum vulgareContig25737_atContig25737--3e-1At1g13540unknown proteinC.G.S.X.
0.028e-240Oryza sativaOs10g0150800AK061299.1-Protein of unknown function DUF1210 family protein2e+0At5g14340AtMYB40 (myb domain protein 40)C.G.S.X.
0.104e-344Populus trichocarpaPtpAffx.19566.1.A1_atCV241844hypothetical protein-2e-3At4g08320tetratricopeptide repeat (TPR)-containing proteinC.G.S.X.
0.037e-136Triticum aestivumTaAffx.108728.1.S1_atCA684792--3e-1At5g18540unknown proteinC.G.S.X.
0.022e-136Vitis vinifera1619889_atCF207362--2e-2At1g67195MIR414 (MICRORNA 414)C.G.S.X.
0.023e-136Zea maysZm.9842.1.A1_atBM340816--3e-1At5g20370serine-rich protein-relatedC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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