CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g08230

Gene name glycine-rich protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.44 57.2 At4g08230 826373 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFVA S.X. H.G.
0.40 50.8 At1g30070 839886 SGS domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOPF S.X. H.G.
0.40 50.8 At3g16050 820850 A37 Encodes a protein with pyridoxal phosphate synthase activity whose transcripts were detected mostly in roots and accumulate during senescence. The protein was found in very low abundance, which prevented a specific localisation. S.X. H.G.
0.33 38.1 At2g42270 818828 U5 small nuclear ribonucleoprotein helicase, putative F:in 6 functions;P:unknown;C:unknown;BOMFAPV S.X. H.G.
0.29 30.3 At1g10170 837555 ATNFXL1 (ARABIDOPSIS THALIANA NF-X-LIKE 1) Encodes AtNFXL1, a homologue of the putative human transcription repressor NF-X1. Functions as a negative regulator of the trichothecene phytotoxin-induced defense response. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
581.7 100.0 E-MEXP-98-raw-cel-320188914
552.3 100.0 E-MEXP-98-raw-cel-320188749
451.8 100.0 E-MEXP-98-raw-cel-320188969
423.1 100.0 E-MEXP-98-raw-cel-320188694
150.7 99.9 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
62.2 99.8 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
52.0 99.8 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
51.6 99.8 GSM176876 AWP_AL_Txed_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
50.9 99.8 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
46.9 99.8 E-MEXP-1725-raw-cel-1669614562
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 6e-1 34 At5g03340 831870 cell division cycle protein 48, putative / CDC48, putative F:in 6 functions;P:unknown;C:cell wall;BOMFPAV C.G. S.X.
0.01 6e-1 34 At3g09840 820142 CDC48 (CELL DIVISION CYCLE 48) Encodes a cell division cycle protein, a member of AAA-type ATPases gene family. Expressed throughout the plant in regions of cell division. Within the cell, sub-cellular localization varies depending on the stage of the cell cycle.Mutants in which the expression of CDC48A is altered show defects in cytokinesis, cell expansion and cell differentiation. C.G. S.X.
0.02 6e-1 34 At3g13020 820488 hAT dimerisation domain-containing protein F:protein dimerization activity;P:biological_process unknown;C:cellular_component unknown;PBFMO C.G. S.X.
0.02 3e+0 32 At5g15300 831382 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB C.G. S.X.
0.02 3e+0 32 At3g15160 820747 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;MPO C.G. S.X.
0.01 3e+0 32 At3g13100 820498 ATMRP7 member of MRP subfamily C.G. S.X.
0.01 3e+0 32 At3g62240 825397 zinc finger (C2H2 type) family protein F:protein binding, zinc ion binding;P:unknown;C:intracellular;OMFBPV C.G. S.X.
0.02 3e+0 32 At3g49840 824146 unknown protein F:unknown;P:unknown;C:endomembrane system;PBM C.G. S.X.
0.00 3e+0 32 At1g72270 843559 unknown protein F:unknown;P:unknown;C:mitochondrion;MPFO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 6e-5 48 Glycine max Gma.5710.1.S1_at AI442566 - - 7e-5 At4g08230 glycine-rich protein C.G. S.X.
0.04 5e+0 30 Hordeum vulgare Contig19273_at Contig19273 - - 1e+0 At5g58110 ATPase activator/ chaperone binding C.G. S.X.
0.04 3e-1 36 Oryza sativa Os.51061.1.S1_at - - - 0 C.G. S.X.
0.05 6e-2 38 Populus trichocarpa PtpAffx.12741.1.A1_at CV234093 - - 8e-2 At4g08230 glycine-rich protein C.G. S.X.
0.04 3e+0 32 Triticum aestivum TaAffx.85216.1.S1_at CA625163 - - 6e-30 At4g13930 SHM4 (serine hydroxymethyltransferase 4) C.G. S.X.
0.09 1e-8 57 Vitis vinifera 1622126_at CF568916 - - 7e-8 At4g08230 glycine-rich protein C.G. S.X.
0.05 1e+0 32 Zea mays Zm.7113.1.A1_at AY107196.1 - - 6e-1 At5g19090 heavy-metal-associated domain-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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