Gene omics information

Query gene ID At4g08230
Gene name glycine-rich protein
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4457.2At4g08230826373glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFVAS.X.H.G.
0.4050.8At1g30070839886SGS domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOPFS.X.H.G.
0.4050.8At3g16050820850A37Encodes a protein with pyridoxal phosphate synthase activity whose transcripts were detected mostly in roots and accumulate during senescence. The protein was found in very low abundance, which prevented a specific localisation.S.X.H.G.
0.3338.1At2g42270818828U5 small nuclear ribonucleoprotein helicase, putativeF:in 6 functions;P:unknown;C:unknown;BOMFAPVS.X.H.G.
0.2930.3At1g10170837555ATNFXL1 (ARABIDOPSIS THALIANA NF-X-LIKE 1)Encodes AtNFXL1, a homologue of the putative human transcription repressor NF-X1. Functions as a negative regulator of the trichothecene phytotoxin-induced defense response.S.X.H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
150.799.9GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
62.299.8GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
52.099.8GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
51.699.8GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.016e-134At5g03340831870cell division cycle protein 48, putative / CDC48, putativeF:in 6 functions;P:unknown;C:cell wall;BOMFPAVC.G.S.X.
0.016e-134At3g09840820142CDC48 (CELL DIVISION CYCLE 48)Encodes a cell division cycle protein, a member of AAA-type ATPases gene family. Expressed throughout the plant in regions of cell division. Within the cell, sub-cellular localization varies depending on the stage of the cell cycle.Mutants in which the expression of CDC48A is altered show defects in cytokinesis, cell expansion and cell differentiation.C.G.S.X.
0.026e-134At3g13020820488hAT dimerisation domain-containing proteinF:protein dimerization activity;P:biological_process unknown;C:cellular_component unknown;PBFMOC.G.S.X.
0.023e+032At5g15300831382pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBC.G.S.X.
0.023e+032At3g15160820747unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;MPOC.G.S.X.
0.013e+032At3g13100820498ATMRP7member of MRP subfamilyC.G.S.X.
0.013e+032At3g62240825397zinc finger (C2H2 type) family proteinF:protein binding, zinc ion binding;P:unknown;C:intracellular;OMFBPVC.G.S.X.
0.023e+032At3g49840824146unknown proteinF:unknown;P:unknown;C:endomembrane system;PBMC.G.S.X.
0.003e+032At1g72270843559unknown proteinF:unknown;P:unknown;C:mitochondrion;MPFOC.G.S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.076e-548Glycine maxGma.5710.1.S1_atAI442566--7e-5At4g08230glycine-rich proteinC.G.S.X.
0.045e+030Hordeum vulgareContig19273_atContig19273--1e+0At5g58110ATPase activator/ chaperone bindingC.G.S.X.
0.043e-136Oryza sativaOs.51061.1.S1_at---0C.G.S.X.
0.056e-238Populus trichocarpaPtpAffx.12741.1.A1_atCV234093--8e-2At4g08230glycine-rich proteinC.G.S.X.
0.043e+032Triticum aestivumTaAffx.85216.1.S1_atCA625163--6e-30At4g13930SHM4 (serine hydroxymethyltransferase 4)C.G.S.X.
0.091e-857Vitis vinifera1622126_atCF568916--7e-8At4g08230glycine-rich proteinC.G.S.X.
0.051e+032Zea maysZm.7113.1.A1_atAY107196.1--6e-1At5g19090heavy-metal-associated domain-containing proteinC.G.S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage