Gene omics information

Query gene ID At4g08180
Gene name ORP1C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1C)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.3338.1At4g08180826368ORP1C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1C)F:phosphoinositide binding, oxysterol binding;P:steroid metabolic process, signal transduction;C:cellular_component unknown;MFOPBS.X.H.G.
0.3133.8At5g45190834555cyclin family proteinEncodes a cyclin T partner CYCT1;5. Plays important roles in infection with Cauliflower mosaic virus (CaMV).S.X.H.G.
0.2930.3At5g08630830764DDT domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVAS.X.H.G.
0.2930.3At5g11390831010unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVS.X.H.G.
0.2930.3At5g60820836203zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFBVS.X.H.G.
0.1811.4At3g19670821504protein bindingF:protein binding;P:biological_process unknown;C:cellular_component unknown;MOFPBAVS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
98.399.9GSM284395Arabidopsis GPSc1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
95.599.9GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
89.799.9GSM284388Arabidopsis GMPE1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
61.799.8GSM311290Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
60.199.8GSM311281Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
58.499.8GSM284387Arabidopsis GSUS4bGSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
57.399.8GSM311289Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
56.699.8GSM284389Arabidopsis GMPE2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
55.999.8GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
54.299.8E-ATMX-35-raw-cel-1574334832
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.660676At2g31020817653ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A)F:oxysterol binding;P:steroid metabolic process;C:unknown;MFOPBVC.G.S.X.
0.470658At2g31030817654ORP1B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1B)F:oxysterol binding;P:steroid metabolic process;C:cellular_component unknown;MFOPC.G.S.X.
0.164e-1997At1g13170837875ORP1D (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1D)F:oxysterol binding;P:steroid metabolic process;C:unknown;MFOPC.G.S.X.
0.122e-1585At4g22540828349ORP2A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2A)F:phosphoinositide binding, oxysterol binding;P:steroid metabolic process, signal transduction;C:cellular_component unknown;MFOPC.G.S.X.
0.083e-1067At4g12460826858ORP2B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2B)F:oxysterol binding;P:steroid metabolic process;C:cellular_component unknown;MFOPC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.272e-58228Glycine maxGmaAffx.78583.1.S1_atBM891075--4e-57At2g31030ORP1B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1B)C.G.S.X.
0.094e-240Hordeum vulgareContig14887_atContig14887--2e-2At4g08180ORP1C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1C)C.G.S.X.
0.251e-51206Oryza sativaOs03g0704700CA764876-Pleckstrin-like domain containing protein5e-64At2g31030ORP1B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1B)C.G.S.X.
0.347e-111402Populus trichocarpaPtp.3653.1.S1_atCX175675hypothetical protein-3e-117At2g31030ORP1B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1B)C.G.S.X.
0.073e-757Triticum aestivumTa.14003.1.A1_atBQ487403--4e-8At2g31020ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A)C.G.S.X.
0.014e-136Vitis vinifera1613371_s_atCB340927hypothetical LOC100251362-1e-32Atcg01130-C.G.S.X.
0.015e-136Zea maysZm.968.2.A1_atAW052810FIP1-3e-2At5g23370GRAM domain-containing protein / ABA-responsive protein-relatedC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0007165The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell.
CGO:0008202The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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