CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g08160

Gene name glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.63 78.1 At4g08160 826365 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein Encodes a putative glycosyl hydrolase family 10 protein (xylanase). S.X. H.G.
0.96 97.3 At1g10800 837623 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.96 97.3 At1g23460 838954 polygalacturonase F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA S.X. H.G.
0.92 96.0 At1g70500 843386 polygalacturonase, putative / pectinase, putative F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA S.X. H.G.
0.88 94.0 At1g24030 839015 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVA S.X. H.G.
0.83 91.4 At1g71930 843524 VND7 (VASCULAR RELATED NAC-DOMAIN PROTEIN 7) Encodes a NAC-domain transcription factor with transcriptional activation activity that is involved in xylem formation. Induces transdifferentiation of various cells into protoxylem vessel elements. Located in the nucleus. Expression induced in the presence of auxin, cytokinin and brassinosteroids. S.X. H.G.
0.83 91.4 At2g46760 819289 FAD-binding domain-containing protein F:oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity;P:unknown;C:membrane;BOFPMA S.X. H.G.
0.78 88.6 At2g38320 818412 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;PMO S.X. H.G.
0.75 86.9 At5g12870 831127 MYB46 (MYB DOMAIN PROTEIN 46) Member of the R2R3 factor gene family. S.X. H.G.
0.67 81.6 At5g19870 832108 unknown protein F:unknown;P:unknown;C:endomembrane system;MP S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
511.8 100.0 GSM184910 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
506.0 100.0 GSM133963 Fukuda_1-8_6B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
491.3 100.0 GSM133962 Fukuda_1-7_6A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
332.6 100.0 GSM184911 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
218.0 100.0 GSM133964 Fukuda_1-9_8A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
211.9 100.0 GSM184920 Arabidopsis, root cells, stele, 140 mM NaCls, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
206.1 100.0 GSM133965 Fukuda_1-10_8B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
167.0 100.0 GSM184919 Arabidopsis, root cells, stele, 140 mM NaCls, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
132.5 99.9 GSM184912 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
132.5 99.9 GSM184894 Arabidopsis, root cells, columella root cap, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.22 1e-9 65 At1g58370 842206 RXF12 Encodes a protein with xylanase activity. C.G. S.X.
0.09 2e-8 61 At1g10050 837540 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein Encodes a putative glycosyl hydrolase family 10 protein (xylanase). C.G. S.X.
0.01 3e-1 38 At5g24430 832514 calcium-dependent protein kinase, putative / CDPK, putative F:in 6 functions;P:N-terminal protein myristoylation;C:plasma membrane;MOPFBVA C.G. S.X.
0.01 3e-1 38 At4g38300 829987 glycosyl hydrolase family 10 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:unknown;BFPOM C.G. S.X.
0.01 3e-1 38 At4g38650 830021 glycosyl hydrolase family 10 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BFOPM C.G. S.X.
0.01 3e-1 38 At3g07250 819913 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:transport, nucleocytoplasmic transport;C:intracellular;MOPFVB C.G. S.X.
0.01 3e-1 38 At3g03800 821141 SYP131 (SYNTAXIN OF PLANTS 131) member of SYP13 Gene Family C.G. S.X.
0.01 3e-1 38 At1g17840 838363 WBC11 (WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11) Encodes a plasma membrane-localized ATP-binding cassette transporter, that is required for cutin transport to the extracellular matrix. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 7e-6 54 Glycine max GmaAffx.25476.1.S1_at AW184945 - - 1e-6 At4g08160 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein C.G. S.X.
0.04 1e-1 38 Hordeum vulgare Contig22400_at Contig22400 - - 2e-1 At4g08160 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein C.G. S.X.
0.04 1e-7 59 Oryza sativa Os03g0672900 9631.m04567 - RXF12 protein (Xylan endohydrolase) (F19C14.2protein) 8e-8 At4g08160 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein C.G. S.X.
0.16 5e-22 107 Populus trichocarpa Ptp.703.1.S1_at AY935501.1 hypothetical protein - 8e-21 At1g58370 RXF12 C.G. S.X.
0.03 5e-9 63 Triticum aestivum Ta.8240.1.S1_at BQ161640 - - 5e-9 At4g08160 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein C.G. S.X.
0.01 3e-1 36 Vitis vinifera 1615727_at CF205417.1 hypothetical protein LOC100261981 - 9e-2 At4g31470 pathogenesis-related protein, putative C.G. S.X.
0.01 2e+0 34 Zea mays Zm.15818.1.S1_at M73828.1 ferredoxin5 - 8e-2 At1g10960 ATFD1 (FERREDOXIN 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0005975 The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00412 Glycoside Hydrolase

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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