CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g08140

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.20 14.4 At4g08140 826362 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP S.X. H.G.
0.32 35.7 At5g63340 836454 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.29 30.3 At1g43140 3767291 ubiquitin protein ligase binding F:ubiquitin protein ligase binding;P:ubiquitin-dependent protein catabolic process;C:endomembrane system, cullin-RING ubiquitin ligase complex S.X. H.G.
0.25 22.6 At1g32570 840151 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.19 12.7 At2g05950 815148 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
1156.1 100.0 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
849.0 100.0 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
557.6 100.0 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
324.2 100.0 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
225.3 100.0 E-MEXP-509-raw-cel-829148597
202.9 100.0 E-MEXP-509-raw-cel-829148561
124.8 99.9 E-MEXP-509-raw-cel-829148525
122.8 99.9 E-MEXP-509-raw-cel-829148348
120.0 99.9 E-MEXP-509-raw-cel-829148201
96.6 99.9 E-MEXP-509-raw-cel-829148456
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.16 9e-89 325 At2g20580 816580 RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) encoding the RPN subunits of the 26S proteasome C.G. S.X.
0.14 1e-4 46 At4g28470 828964 RPN1B (26S PROTEASOME REGULATORY SUBUNIT S2 1B) encoding the RPN subunits of the 26S proteasome C.G. S.X.
0.02 3e-2 38 At1g30010 839880 intron maturase, type II family protein F:RNA binding, RNA-directed DNA polymerase activity;P:RNA-dependent DNA replication, RNA splicing;C:unknown;BPOFAMV C.G. S.X.
0.02 1e-1 36 At5g25300 832602 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM C.G. S.X.
0.01 5e-1 34 At5g47020 834748 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVA C.G. S.X.
0.01 2e+0 32 At5g20420 832164 CHR42 (chromatin remodeling 42) F:helicase activity, DNA binding, ATP binding, nucleic acid binding;P:unknown;C:unknown;MFBOPAV C.G. S.X.
0.07 2e+0 32 At5g50810 835153 TIM8 Encodes a small zinc finger-like protein that is a component of the mitochondrial protein import apparatus. C.G. S.X.
0.02 2e+0 32 At5g36890 833656 BGLU42 (BETA GLUCOSIDASE 42) F:cation binding, beta-glucosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:cellulose catabolic process, carbohydrate metabolic process;C:unknown;BOPMFA C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 7e-1 34 Glycine max HgAffx.24097.1.S1_at BF013752 - - 6e-1 At4g08140 - C.G. S.X.
0.04 1e+1 28 Hordeum vulgare HVSMEn0025G16r2_at HVSMEn0025G16r2 - - 3e-7 At5g17050 UGT78D2 (UDP-GLUCOSYL TRANSFERASE 78D2) C.G. S.X.
0.04 4e+0 32 Oryza sativa OsAffx.3365.1.S1_s_at - - - 0 C.G. S.X.
0.04 3e+0 32 Populus trichocarpa Ptp.4445.1.S1_s_at BU868960 hypothetical protein - 2e-36 At3g11500 small nuclear ribonucleoprotein G, putative / snRNP-G, putative / Sm protein G, putative C.G. S.X.
0.05 5e-1 34 Triticum aestivum Ta.26860.1.A1_at CD491488 - - 1e+0 At4g08140 - C.G. S.X.
0.05 2e+0 30 Vitis vinifera 1616497_at CB981932 hypothetical protein LOC100262039 - 2e-1 At1g04260 MPI7 (CAMV MOVEMENT PROTEIN INTERACTING PROTEIN 7) C.G. S.X.
0.04 3e+0 30 Zea mays Zm.9908.1.A1_at CF054801 hypothetical protein LOC100277932 - 1e-37 At1g22840 CYTC-1 (CYTOCHROME C-1) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage