CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g05190

Gene name ATK5 (ARABIDOPSIS THALIANA KINESIN 5)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.88 94.0 At4g05190 825867 ATK5 (ARABIDOPSIS THALIANA KINESIN 5) ATK5 encodes a kinesin protein involved in microtubule spindle morphogenesis. It acts as a minus-end directed motor as well as a plus-end tracking protein (+TIP). Localizes to mitotic spindle midzones and regions rich in growing plus-ends within phragmoplasts. S.X. H.G.
0.92 96.0 At1g02730 839467 ATCSLD5 Encodes a gene similar to cellulose synthase. Knock-out mutant has reduced growth, reduced xylan level and reduced xylan synthase activity in stems. S.X. H.G.
0.92 96.0 At1g18370 838418 HIK (HINKEL) Mutant has cytokinesis defects; seedling lethal S.X. H.G.
0.92 96.0 At4g15830 827264 binding F:binding;P:biological_process unknown;C:cellular_component unknown;MPOF S.X. H.G.
0.92 96.0 At4g33260 829462 CDC20.2 putative cdc20 protein (CDC20.2) S.X. H.G.
0.88 94.0 At3g02640 821289 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PO S.X. H.G.
0.82 90.9 At1g76310 843964 CYCB2 core cell cycle genes S.X. H.G.
0.77 88.0 At5g36710 833636 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
24.8 99.6 GSM133759 Lindsey_1-9_heart-stage-cotyledon_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
24.6 99.6 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
22.1 99.6 E-MEXP-1797-raw-cel-1669767976
21.9 99.6 GSM133950 Murray_2-6_T10-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
21.2 99.6 E-MEXP-1797-raw-cel-1669767958
20.0 99.6 E-MEXP-1797-raw-cel-1669768048
19.8 99.6 E-MEXP-300-raw-cel-460515197
19.4 99.6 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
18.6 99.5 E-ATMX-31-raw-cel-1516947899
18.5 99.5 E-MEXP-300-raw-cel-460515139
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.76 0 1239 At4g21270 827876 ATK1 (ARABIDOPSIS THALIANA KINESIN 1) Encodes a kinesin-like motor protein heavy chain. Loss of function mutations have reduced fertility and are defective in spindle formation in male meiosis. C.G. S.X.
0.17 2e-27 125 At5g54670 835556 ATK3 (ARABIDOPSIS THALIANA KINESIN 3) Encodes a truncated KatC polypeptide (KatC(207-754)), which includes the carboxyl-terminal region of KatC. This was expressed in Escherichia coli and was shown to possess microtubule-stimulated ATPase activity. C.G. S.X.
0.13 2e-27 125 At4g27180 828826 ATK2 (ARABIDOPSIS THALIANA KINESIN 2) kinesin heavy chain subunit C.G. S.X.
0.01 2e-5 52 At2g22610 816792 kinesin motor protein-related F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOBFPAV C.G. S.X.
0.01 1e-3 46 At3g17360 820999 POK1 (PHRAGMOPLAST ORIENTING KINESIN 1) PHRAGMOPLAST ORIENTING KINESIN 1 is one of the two Arabidopsis homologs isolated in yeast two-hybrid screen for interaction partners of maize gene TANGLED1 (TAN1). Based on sequence homology in their motor domains, POK1 and POK2 belong to the kinesin-12 class which also includes the well-characterized group of phragmoplast-associated kinesins AtPAKRPs. Both kinesins are composed of an N-terminal motor domain throughout the entire C terminus and putative cargo binding tail domains. The expression domains for POK1 constructs were more limited than those for POK2; both are expressed in tissues enriched for dividing cells. The phenotype of pok1/pok2 double mutants strongly resembles that of maize tan1 mutants, characterized by misoriented mitotic cytoskeletal arrays and misplaced cell walls. C.G. S.X.
0.01 1e-3 46 At1g62630 842560 disease resistance protein (CC-NBS-LRR class), putative F:protein binding, ATP binding;P:N-terminal protein myristoylation, defense response;C:cellular_component unknown;PMBOFAV C.G. S.X.
0.01 8e-2 40 At5g66310 836763 kinesin motor family protein F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOFPBVA C.G. S.X.
0.03 8e-2 40 At5g41310 834132 kinesin motor protein-related F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOFPBVA C.G. S.X.
0.01 8e-2 40 At3g51150 824279 kinesin motor family protein F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOPFBV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.20 4e-38 161 Glycine max GmaAffx.21330.1.S1_at BG154527 - - 3e-33 At4g27180 ATK2 (ARABIDOPSIS THALIANA KINESIN 2) C.G. S.X.
0.12 1e-11 71 Hordeum vulgare Contig332_at Contig332 - - 3e-6 At5g54670 ATK3 (ARABIDOPSIS THALIANA KINESIN 3) C.G. S.X.
0.10 2e-7 59 Oryza sativa Os07g0105700 AK063949.1 - Carboxy-terminal kinesin 2 (XCTK2) 9e-8 At4g05190 ATK5 (ARABIDOPSIS THALIANA KINESIN 5) C.G. S.X.
0.23 3e-45 184 Populus trichocarpa PtpAffx.209751.1.S1_at pmrna19244 hypothetical protein - 5e-37 At4g21270 ATK1 (ARABIDOPSIS THALIANA KINESIN 1) C.G. S.X.
0.05 1e+0 36 Triticum aestivum Ta.2157.2.A1_a_at BQ169406 - - 3e-1 At4g05190 ATK5 (ARABIDOPSIS THALIANA KINESIN 5) C.G. S.X.
0.01 4e-1 36 Vitis vinifera 1607965_at BQ796492 hypothetical protein LOC100242951 - 2e+0 Atmg00480 - C.G. S.X.
0.12 1e-10 67 Zea mays Zm.6903.1.S1_at AF272757.1 kinesin-like protein11 - 2e-10 At4g05190 ATK5 (ARABIDOPSIS THALIANA KINESIN 5) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0051225 The aggregation, arrangement and bonding together of a set of components to form the spindle, the array of microtubules and associated molecules that serves to move duplicated chromosomes apart.
X GO:0000226 A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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