Gene omics information

Query gene ID At4g05160
Gene name 4-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putative
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6781.6At4g051608258644-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putativeEncodes a peroxisomal protein involved in the activation of fatty acids through esterification with CoA. At4g05160 preferentially activates fatty acids with medium chain length (C6:0 and C7:0) as well as even-numbered long-chain fatty acids (C14:0, C16:0 and C18:0). At4g05160 was also able to catalyze the conversion of OPC-6:0 to its CoA ester and is therefore thought to be involved in the peroxisomal β-oxidation steps of jasmonic acid biosynthesis.S.X.H.G.
0.4050.8At3g59950825165autophagy 4b (APG4b)F:peptidase activity;P:autophagy;C:chloroplast;MOFPS.X.H.G.
0.3846.7At1g09920837524TRAF-type zinc finger-relatedF:zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOFPS.X.H.G.
0.3846.7At1g69960843333PP2A (SERINE/THREONINE PROTEIN PHOSPHATASE 2A)type 2A serine/threonine protein phosphatase (PP2A) mRNA,S.X.H.G.
0.1710.2At3g62580825432-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MFPBS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
11.999.3GSM184477Lateral Root Cap root cells 2hr KCl control treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
10.899.2GSM265432Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 1GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
10.299.2E-MEXP-1443-raw-cel-1581869515
9.499.1GSM265433Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 2GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
9.499.1GSM184934Arabidopsis, whole roots, 140 mM NaCl, 16 hour, replicate 2GSE7642Time course expression analysis of the salt stress response in Arabidopsis roots
8.999.0GSM265425Arabidopsis, root, longitudinal zone 4, standard conditions, rep 2GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
8.299.0GSM266670Arabidopsis, root cells, cortex, -Fe, replicate 2GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatment
7.698.9GSM265424Arabidopsis, root, longitudinal zone 4, standard conditions, rep 1GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
7.598.8GSM131605ATGE_41_CGSE5632AtGenExpress: Developmental series (flowers and pollen)
7.398.8GSM265412Arabidopsis, whole roots, -Fe, replicate 2GSE10496Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.032e-1067At5g381208337924-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family proteinF:4-coumarate-CoA ligase activity;P:metabolic process;C:unknown;BOFMPAVC.G.S.X.
0.032e-1067At1g62940842596ACOS5 (ACYL-COA SYNTHETASE 5)encodes an acyl-CoA synthetase, has in vitro activity towards medium- to long-chain fatty acids and their hydroxylated derivatives. Expressed in the tapetum. Involved in pollen wall exine formation. Null mutants were devoid of pollen grains at anther maturity and were completely male sterile.C.G.S.X.
0.041e-552At1g516808415934CL1 (4-COUMARATE:COA LIGASE 1)encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. In addition to 4-coumarate, it also converts ferulate. The catalytic efficiency was in the following (descending) order: p-coumaric acid, ferulic acid, caffeic acid and 5-OH-ferulic acid. At4CL1 was unable to use sinapic acid as substrate.C.G.S.X.
0.032e-448At1g650608428144CL3encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. mRNA levels are not induced in response to wounding or to fungal infection by P. parasitica. mRNA is expressed in flowers, to a lesser degree in mature leaves and siliques and marginally in seedling roots and bolting stems of mature plants. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, ferulic acid, cinnamic acid and 5-OH-ferulic acid. At4CL3 was unable to use sinapic acid as substrate.C.G.S.X.
0.018e-446At1g204808386364-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family proteinF:4-coumarate-CoA ligase activity;P:phenylpropanoid metabolic process, metabolic process;C:cellular_component unknown;BOFMPAVC.G.S.X.
0.033e-344At3g212308216774CL5 (4-coumarate:CoA ligase 5)The gene encodes a 4-coumarate coenzyme A ligase being able to use sinapate as substrate. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, 5-OH-ferulic acid, ferulic acid and sinapic acid. At4CL5 was unable to use cinnamic acid as substrate. Knockout of At4CL5 (4cl5) revealed no effect on syringyl lignin content indicating that the activity observed does probably not occur in vivo.C.G.S.X.
0.043e-344At3g212408216784CL2 (4-COUMARATE:COA LIGASE 2)encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, ferulic acid, 5-OH-ferulic acid and cinnamic acid. At4CL2 was unable to use sinapic acid as substrate.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.217e-30133Glycine maxGma.5032.1.S1_atBI970519--5e-31At4g051604-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putativeC.G.S.X.
0.111e-1377Hordeum vulgareContig9988_atContig9988--2e-13At4g051604-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putativeC.G.S.X.
0.113e-1171Oryza sativaOs03g0152400CR279600-4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1)(4-coumaroyl-CoA synthase 1) (Clone 4CL14) (Fragment)6e-12At4g051604-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putativeC.G.S.X.
0.235e-963Populus trichocarpaPtp.7231.1.A1_atCV2757034-coumarate-coa ligase-1e-11At4g051604-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putativeC.G.S.X.
0.116e-859Triticum aestivumTaAffx.106960.2.S1_atCA708442--2e-8At4g051604-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putativeC.G.S.X.
0.113e-1995Vitis vinifera1606753_atCF403699hypothetical protein LOC100267198-2e-23At4g051604-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putativeC.G.S.X.
0.024e-136Zea maysZm.4493.1.A1_atCF015022hypothetical protein LOC100279480-4e-1At2g29780kelch repeat-containing F-box family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009695The chemical reactions and pathways resulting in the formation of jasmonic acid, a fatty acid derivative.
XGO:0009850The chemical reactions and pathways involving auxins, a group of plant hormones that regulate aspects of plant growth.
XGO:0009851The chemical reactions and pathways resulting in the formation of auxins, plant hormones that regulate aspects of plant growth.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00061Link to KaPPA-View 4Flavonoids biosynthesis
00064Link to KaPPA-View 4The cinnamate-monolignol pathway/sinapoyl ester biosynthesis
00420Link to KaPPA-View 4Ubiquinone biosynthesis



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
00130Link to KEGG PATHWAYUbiquinone and other terpenoid-quinone biosynthesis
00940Link to KEGG PATHWAYPhenylpropanoid biosynthesis
01061Link to KEGG PATHWAYBiosynthesis of phenylpropanoids
01063Link to KEGG PATHWAYBiosynthesis of alkaloids derived from shikimate pathway
01100Link to KEGG PATHWAYMetabolic pathways
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