CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g05020

Gene name NDB2 (NAD(P)H dehydrogenase B2)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.22 17.5 At4g05020 825844 NDB2 (NAD(P)H dehydrogenase B2) F:disulfide oxidoreductase activity, oxidoreductase activity, FAD binding;P:unknown;C:extrinsic to mitochondrial inner membrane, mitochondrion;BOFPAM S.X. H.G.
0.67 81.6 At4g22530 828348 embryo-abundant protein-related F:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BPFMOA S.X. H.G.
0.67 81.6 At5g51830 835258 pfkB-type carbohydrate kinase family protein F:kinase activity, ribokinase activity;P:response to cadmium ion;C:cellular_component unknown;BOPAMF S.X. H.G.
0.12 4.9 At3g25610 822148 haloacid dehalogenase-like hydrolase family protein F:ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism;P:metabolic process, phospholipid transport, ATP biosynthetic process;C:plasma membrane;MBOFPAV S.X. H.G.
0.06 1.4 At5g63790 836499 ANAC102 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 102) Encodes a member of the NAC family of transcription factors. ANAC102 appears to have a role in mediating response to low oxygen stress (hypoxia) in germinating seedlings. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
55.9 99.8 GSM134421 St.Clair_1-118_348_Van-0_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1 GSE5756 Expression Level Polymorphism Project (ELP) - Van-0
45.6 99.8 E-MEXP-1443-raw-cel-1581869803
42.5 99.8 E-MEXP-546-raw-cel-863289532
41.6 99.8 E-MEXP-546-raw-cel-863289424
34.8 99.7 GSM131321 AtGen_6-3421_Saltstress-Roots-6.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
33.9 99.7 GSM275643 flu_2h GSE10876 Expression data from Arabidopsis thaliana (Ler) rosette leaves after the release of singlet oxygen inside plastids
32.3 99.7 E-MEXP-546-raw-cel-863289476
31.0 99.7 E-MEXP-1443-raw-cel-1581869745
30.9 99.7 GSM131322 AtGen_6-3422_Saltstress-Roots-6.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
29.2 99.7 GSM131325 AtGen_6-3521_Saltstress-Roots-12.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.79 0 1005 At4g21490 828234 NDB3 F:NADH dehydrogenase activity;P:unknown;C:unknown;BOFPAM C.G. S.X.
0.20 3e-25 117 At2g20800 816609 NDB4 (NAD(P)H dehydrogenase B4) F:NADH dehydrogenase activity;P:unknown;C:extrinsic to mitochondrial inner membrane, mitochondrion, plastid;BOFPAM C.G. S.X.
0.13 6e-11 69 At4g28220 828937 NDB1 (NAD(P)H dehydrogenase B1) F:disulfide oxidoreductase activity, NADH dehydrogenase activity;P:unknown;C:extrinsic to mitochondrial inner membrane;BOFPAM C.G. S.X.
0.02 4e-3 44 At2g29990 817549 NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) F:NADH dehydrogenase activity, oxidoreductase activity, FAD binding;P:unknown;C:intrinsic to mitochondrial inner membrane;BOFPAM C.G. S.X.
0.03 4e-3 44 At1g07180 837229 NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1) Internal NAD(P)H dehydrogenase in mitochondria. The predicted protein sequence has high homology with other designated NAD(P)H DHs from microorganisms; the capacity for matrix NAD(P)H oxidation via the rotenone-insensitive pathway is significantly reduced in the Atndi1 mutant plant line; the in vitro translation product of AtNDI1 is imported into isolated mitochondria and located on the inside of the inner membrane. C.G. S.X.
0.01 2e-1 38 At5g52280 835304 protein transport protein-related F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOBFPAV C.G. S.X.
0.01 2e-1 38 At5g02270 831709 ATNAP9 member of NAP subfamily C.G. S.X.
0.01 2e-1 38 At4g00950 827948 MEE47 (maternal effect embryo arrest 47) F:transcription factor activity;P:embryonic development ending in seed dormancy, regulation of transcription;C:cellular_component unknown;PMFO C.G. S.X.
0.02 2e-1 38 At3g23460 821927 cyclopropane fatty acid synthase-related F:cyclopropane-fatty-acyl-phospholipid synthase activity;P:lipid biosynthetic process;C:chloroplast;OBPFM C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.19 6e-21 103 Glycine max GmaAffx.64627.1.S1_at BI316267 - - 4e-16 At4g21490 NDB3 C.G. S.X.
0.22 3e-17 89 Hordeum vulgare Contig7354_at Contig7354 - - 9e-17 At4g05020 NDB2 (NAD(P)H dehydrogenase B2) C.G. S.X.
0.15 1e-7 59 Oryza sativa Os05g0331200 AK100884.1 - External rotenone-insensitive NADPH dehydrogenase 7e-8 At4g05020 NDB2 (NAD(P)H dehydrogenase B2) C.G. S.X.
0.33 1e-25 119 Populus trichocarpa PtpAffx.163938.1.S1_s_at AJ769446 hypothetical protein - 5e-39 At4g21490 NDB3 C.G. S.X.
0.16 1e-18 95 Triticum aestivum Ta.8832.1.S1_at BJ294317 - - 2e-18 At4g05020 NDB2 (NAD(P)H dehydrogenase B2) C.G. S.X.
0.18 1e-49 196 Vitis vinifera 1621765_at CD004023 - - 3e-49 At4g05020 NDB2 (NAD(P)H dehydrogenase B2) C.G. S.X.
0.13 3e-5 50 Zea mays Zm.1869.1.S1_at BU051083 hypothetical protein LOC100274336 - 8e-5 At4g05020 NDB2 (NAD(P)H dehydrogenase B2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00190 Oxidative phosphorylation
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