CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g05000

Gene name VPS28-2

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.28 30.3 At4g05000 825842 VPS28-2 F:transporter activity;P:transport;C:ESCRT I complex;MFPO S.X. H.G.
0.71 84.2 At1g11020 837644 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MOPFV S.X. H.G.
0.67 81.6 At4g04860 825823 DER2.2 (DERLIN-2.2) F:unknown;P:proteolysis;C:cellular_component unknown;MOFP S.X. H.G.
0.60 75.7 At1g71190 843459 SAG18 (SENESCENCE ASSOCIATED GENE 18) Senescence associated gene (SAG). Expression induced by ozone. Encodes a plant-specific protein of unknown function. Based on a personal communication from David Meinke (08/21/2007), this gene is not allelic to TTN4, even though this has been stated previously in a publication. S.X. H.G.
0.57 73.8 At4g32680 829403 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.56 73.0 At5g02040 831904 PRA1.A1 (PRENYLATED RAB ACCEPTOR 1.A1) F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;MPF S.X. H.G.
0.50 65.3 At4g26240 828730 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF S.X. H.G.
0.38 46.7 At1g68070 843135 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:plasma membrane;PMOFVB S.X. H.G.
0.30 32.1 At1g54115 841851 CCX4 (CATION CALCIUM EXCHANGER 4) Involved in cation (Na and K) homeostasis. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
18.9 99.5 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
13.4 99.4 GSM142625 MC002_ATH1_A1.3-dubos-wtx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
12.5 99.3 GSM142631 MC002_ATH1_A3.3-dubos-6kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
12.1 99.3 GSM142623 MC002_ATH1_A1.1-dubos-wtx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
11.3 99.3 GSM142629 MC002_ATH1_A3.1-dubos-6kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
10.7 99.2 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
10.6 99.2 GSM142630 MC002_ATH1_A3.2-dubos-6kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
10.4 99.2 E-MEXP-509-raw-cel-829148703
9.9 99.1 GSM142624 MC002_ATH1_A1.2-dubos-wtx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
9.4 99.1 GSM142641 MC002_ATH1_A7.1-dubos-wLh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.82 1e-96 353 At4g21560 828241 VPS28-1 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 28 HOMOLOG 1) F:transporter activity;P:transport;C:ESCRT I complex;MFPO C.G. S.X.
0.03 2e-2 40 At3g03120 821079 ATARFB1C (ADP-ribosylation factor B1C) A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to ADP-ribosylation factor 1; ARF 1 (GP:385340) {Drosophila melanogaster}, other ARFs and ARF-like proteins. C.G. S.X.
0.02 3e-1 36 At3g53100 824476 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.22 8e-15 81 Glycine max Gma.15220.1.S1_s_at CD398333 Ubiquitin-conjugation enzyme gene - 4e-12 At4g21560 VPS28-1 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 28 HOMOLOG 1) C.G. S.X.
0.03 2e-1 36 Hordeum vulgare Contig19684_at Contig19684 - - 3e-1 At4g26730 methyltransferase C.G. S.X.
0.02 2e+0 34 Oryza sativa Os.50304.2.S1_at - - - 0 C.G. S.X.
0.58 2e-24 113 Populus trichocarpa Ptp.5404.1.S1_s_at CV247987 hypothetical protein - 2e-24 At4g05000 VPS28-2 C.G. S.X.
0.03 5e+0 32 Triticum aestivum TaAffx.113804.1.S1_at CA604818 - - 3e+0 At4g05000 VPS28-2 C.G. S.X.
0.27 3e-17 87 Vitis vinifera 1618851_at CF513728 - - 8e-17 At4g05000 VPS28-2 C.G. S.X.
0.03 9e-3 40 Zea mays Zm.3790.1.A1_at AY107835.1 - - 3e-2 At4g05000 VPS28-2 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006810 The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
04144 Endocytosis
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