Gene omics information

Query gene ID At4g04990
Gene name unknown protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5974.7At4g04990825841unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOFBVS.X.H.G.
0.8491.9At2g28960817445leucine-rich repeat protein kinase, putativeF:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAS.X.H.G.
0.7385.5At3g54040824571photoassimilate-responsive protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.6882.2At3g13760820585DC1 domain-containing proteinF:protein binding, zinc ion binding;P:unknown;C:membrane;PMOS.X.H.G.
0.6781.6At1g31885840079transporterF:transporter activity;P:transport;C:integral to membrane, membrane;BPOMFAVS.X.H.G.
0.6781.6At3g24290822017AMT1F:ammonium transmembrane transporter activity;P:ammonium transport, transport;C:endomembrane system, membrane;OBMFPAS.X.H.G.
0.6781.6At3g51350824298aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:anchored to membrane;PMFOBAVS.X.H.G.
0.6680.1At2g28990817448leucine-rich repeat protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAS.X.H.G.
0.6680.1At2g23030816833SNRK2.9 (SNF1-RELATED PROTEIN KINASE 2.9)encodes a member of SNF1-related protein kinases (SnRK2)S.X.H.G.
0.6579.6At5g05400830422disease resistance protein (CC-NBS-LRR class), putativeF:protein binding, ATP binding;P:N-terminal protein myristoylation, defense response, apoptosis;C:chloroplast;PMBOFAS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
199.5100.0E-MEXP-828-raw-cel-1156922342
163.499.9GSM291124root - 21% oxygen - 48h - FGSE11558transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
125.299.9E-MEXP-828-raw-cel-1156922684
106.199.9E-MEXP-828-raw-cel-1156922634
92.699.9E-MEXP-828-raw-cel-1156922659
91.199.9E-MEXP-828-raw-cel-1156922595
85.599.9E-MEXP-828-raw-cel-1156922438
79.999.9E-MEXP-828-raw-cel-1156922416
79.799.9GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
66.799.8E-MEXP-828-raw-cel-1156922905
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.024e-136At5g02910831746F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOC.G.S.X.
0.024e-136At4g24810828584ABC1 family proteinsimilar to ABC1 family protein, contains InterPro domain ABC1 protein (InterPro:IPR004147)C.G.S.X.
0.024e-136At3g03560821235unknown proteinF:unknown;P:unknown;C:plasma membrane;POBMAC.G.S.X.
0.014e-136At1g07650837278leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVAC.G.S.X.
0.024e-136At1g58080842175ATATP-PRT1 (ATP PHOSPHORIBOSYL TRANSFERASE 1)ATP phosphoribosyl transferase, catalyses first step of histidine biosynthesisC.G.S.X.
0.032e+034At5g60680836189unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PMC.G.S.X.
0.012e+034At4g04510825781protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAC.G.S.X.
0.012e+034At3g57530824920CPK32 (CALCIUM-DEPENDENT PROTEIN KINASE 32)Calcium-dependent Protein Kinase. ABA signaling component that regulates the ABA-responsive gene expression via ABF4. AtCPK32 has autophosphorylation activity and can phosphorylate ABF4 in vitroC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.036e-136Glycine maxGmaAffx.64411.2.S1_s_atBG510800--1e-2At3g14120-C.G.S.X.
0.039e-134Hordeum vulgareContig15134_atContig15134--2e+0At5g42635glycine-rich proteinC.G.S.X.
0.039e-136Oryza sativaOsAffx.19385.1.S1_at---0C.G.S.X.
0.036e-136Populus trichocarpaPtpAffx.249.633.A1_x_atCV259819--1e-9At2g21660CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)C.G.S.X.
0.035e-136Triticum aestivumTaAffx.108016.1.S1_atCA692394--4e+0At5g24570unknown proteinC.G.S.X.
0.032e+032Vitis vinifera1618952_atCF405185--7e-1At4g18890brassinosteroid signalling positive regulator-relatedC.G.S.X.
0.023e+032Zea maysZmAffx.197.1.A1_atAI668478--3e+0At4g05230ubiquitin family proteinC.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage