CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g04980

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g04980 825839 - F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPBVA S.X. H.G.
0.75 86.9 At5g42490 834256 kinesin motor family protein F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOFPBVA S.X. H.G.
0.67 81.6 At1g01460 839469 PIPK11 Type I phosphatidylinositol-4-phosphate 5-kinase, subfamily A. S.X. H.G.
0.50 65.3 At1g66210 842936 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOMFA S.X. H.G.
0.44 57.2 At1g17540 838328 kinase F:kinase activity;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA S.X. H.G.
0.28 30.3 At1g18990 838480 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MOPFBVA S.X. H.G.
0.21 15.8 At1g04540 839498 C2 domain-containing protein F:unknown;P:biological_process unknown;C:membrane;PMOFB S.X. H.G.
0.20 14.4 At3g20190 821563 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:unknown;PMOFBVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
290.8 100.0 GSM239253 CaMV::DME pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
218.0 100.0 GSM239251 Columbia glabrous (C24) wild type pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
179.9 100.0 E-MEXP-1138-raw-cel-1432772842
171.5 100.0 E-ATMX-35-raw-cel-1574334880
155.2 99.9 E-MEXP-1138-raw-cel-1432773226
152.9 99.9 E-MEXP-1138-raw-cel-1432772586
148.5 99.9 E-MEXP-1138-raw-cel-1432772682
142.1 99.9 E-MEXP-1138-raw-cel-1432772522
140.3 99.9 E-MEXP-1138-raw-cel-1432772714
134.7 99.9 E-MEXP-1138-raw-cel-1432772650
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.05 3e-7 57 At1g61080 842400 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MBOFPVA C.G. S.X.
0.06 1e-3 46 At1g11070 837648 - F:unknown;P:unknown;C:cellular_component unknown;MPBOFVA C.G. S.X.
0.01 2e-2 42 At3g55950 824761 CCR3 (ARABIDOPSIS THALIANA CRINKLY4 RELATED 3) F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.01 7e-2 40 At5g16960 831559 NADP-dependent oxidoreductase, putative F:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:response to oxidative stress;C:unknown;BOMFPA C.G. S.X.
0.01 7e-2 40 At4g15120 827178 VQ motif-containing protein F:molecular_function unknown;P:biological_process unknown;C:unknown;POMFA C.G. S.X.
0.01 7e-2 40 At3g50180 824180 unknown protein F:unknown;P:biological_process unknown;C:chloroplast;MPOFBVA C.G. S.X.
0.01 7e-2 40 At3g61630 825336 CRF6 (CYTOKININ RESPONSE FACTOR 6) CRF6 encodes one of the six cytokinin response factors. CRF5 belongs to the AP2/ERF superfamily of the transcriptional factors. CRF proteins rapidly relocalize to the nucleus in response to cytokinin. Analysis of loos-of-function mutants revealed that the CRFs function redundantly to regulate the development of embryos, cotyledons and leaves. C.G. S.X.
0.01 7e-2 40 At3g43610 823458 tubulin binding F:tubulin binding;P:microtubule cytoskeleton organization;C:chloroplast, spindle pole, microtubule organizing center;MFPO C.G. S.X.
0.03 7e-2 40 At1g54215 841862 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPBOFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e-1 40 Glycine max GmaAffx.91286.1.S1_s_at CF807011 - - 3e-4 At1g78670 ATGGH3 (gamma-glutamyl hydrolase 3) C.G. S.X.
0.02 5e-1 36 Hordeum vulgare HM13L06r_at HM13L06r - - 7e-1 At5g63030 glutaredoxin, putative C.G. S.X.
0.02 1e-1 40 Oryza sativa OsAffx.28031.1.S1_x_at - - - 0 C.G. S.X.
0.09 1e-10 69 Populus trichocarpa PtpAffx.203776.1.S1_at pmrna7458 hypothetical protein - 1e-5 At1g11070 - C.G. S.X.
0.02 7e-2 40 Triticum aestivum TaAffx.85551.1.S1_at CA621796 - - 3e-1 At5g58412 - C.G. S.X.
0.02 2e-2 40 Vitis vinifera 1621435_s_at CF515294 hypothetical protein LOC100253802 - 2e+0 At2g18040 PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE, NIMA-INTERACTING 1) C.G. S.X.
0.02 2e-3 44 Zea mays Zm.3647.1.A1_at BG874056 hypothetical protein LOC100274893 - 5e+0 At4g16060 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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