CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g04900

Gene name RIC10 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 10)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.50 65.3 At4g04900 825829 RIC10 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 10) encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Most similar to RIC9 and RIC11 (subfamily group I). Gene is expressed predominantly in roots, leaves, and seedlings. S.X. H.G.
0.71 84.2 At1g69240 843255 MES15 (METHYL ESTERASE 15) Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco but no enzymatic activity has been identified for this protein. S.X. H.G.
0.58 73.8 At4g03330 827970 SYP123 (SYNTAXIN OF PLANTS 123) member of SYP12 Gene Family S.X. H.G.
0.57 73.8 At3g07900 819981 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P S.X. H.G.
0.56 73.0 At1g16440 838214 kinase F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MOPFBVA S.X. H.G.
0.55 70.6 At1g70460 843382 protein kinase, putative F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:membrane;MBOPFVA S.X. H.G.
0.52 67.4 At1g27740 839667 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFO S.X. H.G.
0.52 67.4 At5g40860 834087 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PO S.X. H.G.
0.48 62.5 At3g61300 825302 C2 domain-containing protein F:molecular_function unknown;P:tryptophan biosynthetic process;C:cellular_component unknown;MPOFV S.X. H.G.
0.44 57.2 At3g12540 820433 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;PMBOA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
311.9 100.0 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
275.3 100.0 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
263.1 100.0 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
201.4 100.0 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
192.9 100.0 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
160.0 99.9 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
144.9 99.9 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
140.3 99.9 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
136.3 99.9 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
134.1 99.9 GSM184905 Arabidopsis, root cells, protophloem, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.29 2e-23 109 At4g21745 5008153 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.07 1e-6 54 At1g03982 3766656 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM C.G. S.X.
0.04 1e-3 44 At4g19100 2745715 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast, membrane;MOBFPV C.G. S.X.
0.02 4e-3 42 At5g66540 836786 - F:molecular_function unknown;P:rRNA processing;C:cytosol, nucleolus, nucleus;MOFBPVA C.G. S.X.
0.03 4e-3 42 At4g14480 827095 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOFBVA C.G. S.X.
0.02 4e-3 42 At3g53110 824477 LOS4 (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4) Encodes a putative DEAD-Box RNA Helicase and has RNA-dependent ATPase activity. Mutant is Sensitive to chilling stress and heat stress. Germination of the mutant is inhibited by ABA. LOS4 may be involved in temperature sensing. Is enriched in the nuclear envelope and also located in the cytoplasm. LOS4 is involved in export of poly A RNA. C.G. S.X.
0.04 4e-3 42 At1g76600 843993 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:nucleolus, nucleus;P C.G. S.X.
0.01 1e-2 40 At5g64420 836563 DNA polymerase V family F:DNA-directed DNA polymerase activity, DNA binding;P:DNA replication, transcription;C:cellular_component unknown;MOFBPV C.G. S.X.
0.01 1e-2 40 At5g27650 832827 PWWP domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 5e-3 42 Glycine max GmaAffx.44471.1.A1_at CA851833 - - 6e-3 At4g04900 RIC10 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 10) C.G. S.X.
0.06 5e-4 44 Hordeum vulgare HVSMEf0002F16r2_at HVSMEf0002F16r2 - - 1e-3 At4g04900 RIC10 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 10) C.G. S.X.
0.08 2e-3 44 Oryza sativa OsAffx.24135.1.S1_at - - - 0 C.G. S.X.
0.13 5e-6 52 Populus trichocarpa PtpAffx.209684.1.S1_at pmrna19114 hypothetical protein - 2e+0 At1g03982 - C.G. S.X.
0.04 4e-3 42 Triticum aestivum TaAffx.6605.1.S1_at CA682009 - - 3e-4 At4g19100 unknown protein C.G. S.X.
0.10 2e-2 38 Vitis vinifera 1620954_at CF513203 hypothetical protein LOC100242907 - 7e-2 At4g04900 RIC10 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 10) C.G. S.X.
0.05 7e-6 50 Zea mays Zm.10803.1.S1_at BQ577732 desiccation-associated protein - 4e-5 At4g04900 RIC10 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 10) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009860 Growth of pollen via tip extension of the intine wall.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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