Gene omics information

Query gene ID At4g04900
Gene name RIC10 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 10)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5065.3At4g04900825829RIC10 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 10)encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Most similar to RIC9 and RIC11 (subfamily group I). Gene is expressed predominantly in roots, leaves, and seedlings.S.X.H.G.
0.7184.2At1g69240843255MES15 (METHYL ESTERASE 15)Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco but no enzymatic activity has been identified for this protein.S.X.H.G.
0.5873.8At4g03330827970SYP123 (SYNTAXIN OF PLANTS 123)member of SYP12 Gene FamilyS.X.H.G.
0.5773.8At3g07900819981unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PS.X.H.G.
0.5673.0At1g16440838214kinaseF:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MOPFBVAS.X.H.G.
0.5570.6At1g70460843382protein kinase, putativeF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:membrane;MBOPFVAS.X.H.G.
0.5267.4At1g27740839667basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFOS.X.H.G.
0.5267.4At5g40860834087unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POS.X.H.G.
0.4862.5At3g61300825302C2 domain-containing proteinF:molecular_function unknown;P:tryptophan biosynthetic process;C:cellular_component unknown;MPOFVS.X.H.G.
0.4457.2At3g12540820433unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PMBOAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
311.9100.0GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
275.3100.0GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
263.1100.0GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
201.4100.0GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
192.9100.0GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
160.099.9GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
144.999.9GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
140.399.9GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
136.399.9GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
134.199.9GSM184905Arabidopsis, root cells, protophloem, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with salt
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.292e-23109At4g217455008153-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.071e-654At1g039823766656-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMC.G.S.X.
0.041e-344At4g191002745715unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast, membrane;MOBFPVC.G.S.X.
0.024e-342At5g66540836786-F:molecular_function unknown;P:rRNA processing;C:cytosol, nucleolus, nucleus;MOFBPVAC.G.S.X.
0.034e-342At4g14480827095protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOFBVAC.G.S.X.
0.024e-342At3g53110824477LOS4 (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4)Encodes a putative DEAD-Box RNA Helicase and has RNA-dependent ATPase activity. Mutant is Sensitive to chilling stress and heat stress. Germination of the mutant is inhibited by ABA. LOS4 may be involved in temperature sensing. Is enriched in the nuclear envelope and also located in the cytoplasm. LOS4 is involved in export of poly A RNA.C.G.S.X.
0.044e-342At1g76600843993unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:nucleolus, nucleus;PC.G.S.X.
0.011e-240At5g64420836563DNA polymerase V familyF:DNA-directed DNA polymerase activity, DNA binding;P:DNA replication, transcription;C:cellular_component unknown;MOFBPVC.G.S.X.
0.011e-240At5g27650832827PWWP domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.065e-342Glycine maxGmaAffx.44471.1.A1_atCA851833--6e-3At4g04900RIC10 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 10)C.G.S.X.
0.065e-444Hordeum vulgareHVSMEf0002F16r2_atHVSMEf0002F16r2--1e-3At4g04900RIC10 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 10)C.G.S.X.
0.082e-344Oryza sativaOsAffx.24135.1.S1_at---0C.G.S.X.
0.135e-652Populus trichocarpaPtpAffx.209684.1.S1_atpmrna19114hypothetical protein-2e+0At1g03982-C.G.S.X.
0.044e-342Triticum aestivumTaAffx.6605.1.S1_atCA682009--3e-4At4g19100unknown proteinC.G.S.X.
0.102e-238Vitis vinifera1620954_atCF513203hypothetical protein LOC100242907-7e-2At4g04900RIC10 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 10)C.G.S.X.
0.057e-650Zea maysZm.10803.1.S1_atBQ577732desiccation-associated protein-4e-5At4g04900RIC10 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 10)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009860Growth of pollen via tip extension of the intine wall.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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