Gene omics information

Query gene ID At4g04770
Gene name ATABC1 (ATP BINDING CASSETTE PROTEIN 1)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.8793.5At4g04770825814ATABC1 (ATP BINDING CASSETTE PROTEIN 1)Encodes an iron-stimulated ATPase. A member of the NAP subfamily of ABC transporters. Involved in Fe-S cluster assembly. Similar to SufB. Involved in the regulation of iron homeostasis. Able to form homodimers. Interacts with AtNAP7 inside the chloroplast.S.X.H.G.
0.6378.1At1g49970841420CLPR1Encodes a ClpP-related sequence. Though similar to ClpP proteins, this does not contains the highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).S.X.H.G.
0.6075.7At5g19540832074unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POBS.X.H.G.
0.5873.8At5g51020835175CRL (CRUMPLED LEAF)Encodes CRL (CRUMPLED LEAF), a protein localized in the outer envelope membrane of plastids. Mutation in this gene affects the pattern of cell division, cell differentiation and plastid division.S.X.H.G.
0.5873.8At3g63520825527CCD1 (CAROTENOID CLEAVAGE DIOXYGENASE 1)Encodes a protein with 9-cis-epoxycarotenoid dioxygenase activity. The enzyme was shown to act on a variety of carotenoid including β-carotene, lutein, zeaxanthin, and all-trans-violaxanthin. When those compounds are used as substrates, the major reaction product detected is a C14 dialdehyde: 4,9-dimethyldodeca-2,4,6,8,10-pentaene-1,12-dial. The enzyme did not cleave as efficiently carotenoids containing 9-cis-double or allenic bonds.S.X.H.G.
0.5673.0At4g25650828670ACD1-LIKE (ACD1-LIKE)Similar to ACD1. Leaves of antisense ACD1-like plants turn yellow in darkness like wild-type whereas antisense ACD1 plants remain dark after five days of dark treatment.S.X.H.G.
0.5673.0At3g58010824970unknown proteinF:unknown;P:biological_process unknown;C:thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast, plastoglobule;PFOS.X.H.G.
0.5570.6At1g09130837432ATP-dependent Clp protease proteolytic subunit, putativeF:serine-type endopeptidase activity;P:proteolysis;C:in 6 components;BOPMFVS.X.H.G.
0.5469.5At3g10970820268haloacid dehalogenase-like hydrolase family proteinF:hydrolase activity, catalytic activity;P:metabolic process;C:chloroplast;BOPAMFS.X.H.G.
0.5368.6At2g03390814868uvrB/uvrC motif-containing proteinF:DNA binding, nuclease activity;P:nucleotide-excision repair;C:chloroplast;OBMFPS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
14.799.4E-ATMX-32-raw-cel-1562974681
14.099.4E-ATMX-32-raw-cel-1562974621
12.999.3E-ATMX-32-raw-cel-1562974595
11.899.3GSM269831T6 leaf-drought-rep3GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
11.799.3E-ATMX-32-raw-cel-1562974409
10.899.2GSM269833T8 leaf-drought-rep3GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
9.499.1E-TABM-52-raw-cel-1583683438
9.299.1GSM269815T6 leaf-drought-rep1GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
9.099.1GSM269829WT leaf-drought-rep3GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
8.799.0GSM269825T8 leaf-drought-rep2GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.765e-107389At5g44316834456ATP-binding-cassette transporter, putativeF:protein binding;P:iron-sulfur cluster assembly;C:unknown;OBAPMC.G.S.X.
0.015e-240At1g48870841309WD-40 repeat family proteinF:protein phosphatase type 2A regulator activity, signal transducer activity;P:signal transduction;C:protein phosphatase type 2A complex, heterotrimeric G-protein complex;MFBOPAC.G.S.X.
0.012e-138At1g02670839532DNA repair protein, putativeF:helicase activity, DNA binding, ATP binding, nucleic acid binding;P:DNA repair;C:cellular_component unknown;BMFOPVAC.G.S.X.
0.012e-138At1g22275838834ZYP1bOne of two nearly identical proteins (ZYP1a) identified by similarity to transverse filament (TF) proteins. These proteins are involved in chromosome synapsis during meiosis I and localize to the synaptonemal complex (SC). Single mutants have reduced fertility and double mutants (induced by RNAi) have severely reduced fertility.C.G.S.X.
0.018e-136At4g181973770303PUP7 (PURINE PERMEASE 7)Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.C.G.S.X.
0.018e-136At2g06210815177ELF8 (EARLY FLOWERING 8)Encodes a yeast CTR9 homolog that is involved in the control of flowering time by elevating FLC expression to a level that creates the vernalization-responsive, winter-annual habit. Yeast CTR9 is a component of a five-member PAF1 complex that associates with RNA pol II and is thought to regulate gene expression by recruiting SET1 (a histone 3 Lys 4 [H3-K4] methyl transferase) to the initially transcribed [5'] regions of target chromatin. Mutants display reduced H3-K4 methylation in both FLC and FLM chromatin.C.G.S.X.
0.018e-136At1g67110843031CYP735A2member of CYP709AC.G.S.X.
0.018e-136At1g62870842588unknown proteinF:unknown;P:unknown;C:cellular_component unknown;PMOFC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.021e+036Glycine maxGmaAffx.92887.1.S1_s_atCF808612--2e-5At1g69295PDCB4 (PLASMODESMATA CALLOSE-BINDING PROTEIN 4)C.G.S.X.
0.088e-1581Hordeum vulgareContig3660_atContig3660--2e-14At4g04770ATABC1 (ATP BINDING CASSETTE PROTEIN 1)C.G.S.X.
0.051e-450Oryza sativaOs01g0830000AK121100.1-SufB7e-5At4g04770ATABC1 (ATP BINDING CASSETTE PROTEIN 1)C.G.S.X.
0.502e-134480Populus trichocarpaPtpAffx.118792.1.S1_atAI165729hypothetical protein-9e-135At4g04770ATABC1 (ATP BINDING CASSETTE PROTEIN 1)C.G.S.X.
0.053e-1067Triticum aestivumTa.27200.1.S1_atCD880640--3e-10At4g04770ATABC1 (ATP BINDING CASSETTE PROTEIN 1)C.G.S.X.
0.419e-69260Vitis vinifera1622660_atCF516479hypothetical protein LOC100266599-2e-68At4g04770ATABC1 (ATP BINDING CASSETTE PROTEIN 1)C.G.S.X.
0.102e-963Zea maysZm.10793.1.A1_atCF635868--5e-9At4g04770ATABC1 (ATP BINDING CASSETTE PROTEIN 1)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0006879Any process involved in the maintenance of an internal equilibrium of iron ions at the level of a cell.
XGO:0016226The incorporation of iron and exogenous sulfur into a metallo-sulfur cluster.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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