CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g04500

Gene name protein kinase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g04500 825780 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.89 94.6 At1g21240 838719 WAK3 (wall associated kinase 3) encodes a wall-associated kinase S.X. H.G.
0.61 76.7 At4g23150 828414 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.42 53.9 At4g23140 828413 CRK6 (CYSTEINE-RICH RLK 6) Arabidopsis thaliana receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307) S.X. H.G.
0.33 38.1 At3g11010 820272 AtRLP34 (Receptor Like Protein 34) F:protein binding, kinase activity;P:signal transduction, defense response;C:cellular_component unknown;PMOBFAV S.X. H.G.
0.20 14.4 At4g11890 826796 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
378.2 100.0 GSM128661 Underwood_1-14_Cor-5x10e7-10h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
181.6 100.0 GSM128662 Underwood_1-15_Cor-5x10e7-10h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
162.2 99.9 GSM133731 Buchanan-Wollaston_A-3-bwoll-C0S_SLD GSE5727 The effects of mutants in stress response pathways on gene expression during senescence
156.2 99.9 GSM142852 MG001_ATH1_A5-Torres-2N3 GSE6176 Impact of Type III effectors on plant defense responses
122.2 99.9 GSM133732 Buchanan-Wollaston_A-4-bwoll-C5S_SLD GSE5727 The effects of mutants in stress response pathways on gene expression during senescence
121.2 99.9 GSM133738 Buchanan-Wollaston_A-10-bwoll-Co2_SLD GSE5727 The effects of mutants in stress response pathways on gene expression during senescence
103.5 99.9 GSM133736 Buchanan-Wollaston_A-8-bwoll-Ei2_SLD GSE5727 The effects of mutants in stress response pathways on gene expression during senescence
100.1 99.9 GSM133735 Buchanan-Wollaston_A-7-bwoll-Ei1_SLD GSE5727 The effects of mutants in stress response pathways on gene expression during senescence
92.6 99.9 GSM133737 Buchanan-Wollaston_A-9-bwoll-Co1_SLD GSE5727 The effects of mutants in stress response pathways on gene expression during senescence
78.3 99.9 GSM142849 MG001_ATH1_A2-Torres-1N3 GSE6176 Impact of Type III effectors on plant defense responses
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.32 0 676 At4g04490 825779 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.33 7e-119 428 At4g04570 825789 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.34 1e-101 371 At4g04540 825785 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.28 1e-86 321 At4g04510 825781 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.07 2e-11 71 At4g11480 826753 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.07 3e-10 67 At4g11470 826752 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.02 3e-7 57 At4g21230 827872 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 2e-6 56 Glycine max GmaAffx.76271.1.S1_at BM178547 - - 2e-6 At4g23270 protein kinase family protein C.G. S.X.
0.09 2e-6 54 Hordeum vulgare Contig25378_at Contig25378 - - 9e-18 At4g21390 B120 C.G. S.X.
0.04 1e-4 50 Oryza sativa OsAffx.30177.3.S1_at - - - 0 C.G. S.X.
0.11 9e-5 50 Populus trichocarpa PtpAffx.225656.1.S1_at pmrna45153 hypothetical protein - 3e-15 At4g38830 protein kinase family protein C.G. S.X.
0.04 7e-2 40 Triticum aestivum TaAffx.48650.1.S1_at BJ250244 - - 4e-2 At4g27300 S-locus protein kinase, putative C.G. S.X.
0.04 7e-2 38 Vitis vinifera 1620671_at CA817707 hypothetical protein LOC100261049 - 1e-13 At1g11340 S-locus lectin protein kinase family protein C.G. S.X.
0.03 2e-3 44 Zea mays Zm.5069.1.A1_at AY111851.1 hypothetical protein LOC100192804 - 2e-4 At1g61460 S-locus protein kinase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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