CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g04450

Gene name WRKY42

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.63 78.1 At4g04450 825775 WRKY42 member of WRKY Transcription Factor; Group II-b S.X. H.G.
0.71 84.2 At1g05290 837025 transcription factor F:transcription factor activity;P:regulation of transcription;C:unknown;PO S.X. H.G.
0.68 82.2 At2g39590 818544 40S ribosomal protein S15A (RPS15aC) F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit;BOMAPF S.X. H.G.
0.67 81.6 At1g21290 3766772 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.63 78.1 At3g45320 823670 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.62 77.3 At5g27940 832861 WPP3 (WPP domain protein 3) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.61 76.7 At4g26440 828750 WRKY34 (WRKY DNA-BINDING PROTEIN 34) member of WRKY Transcription Factor; Group I S.X. H.G.
0.60 75.7 At4g24950 828597 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.59 74.7 At5g52490 835325 fibrillarin, putative F:RNA binding;P:rRNA processing;C:nucleus;MOFAPBV S.X. H.G.
0.55 70.6 At1g05040 839338 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
301.7 100.0 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
270.2 100.0 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
264.2 100.0 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
237.0 100.0 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
227.3 100.0 GSM142735 DH001_ATH1_A2-BCP1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
199.3 100.0 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
194.0 100.0 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
191.3 100.0 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
191.0 100.0 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
163.3 99.9 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.44 1e-119 430 At4g22070 828296 WRKY31 member of WRKY Transcription Factor; Group II-b C.G. S.X.
0.16 3e-43 176 At1g62300 842527 WRKY6 transcription factor WRKY6 (WRKY6) C.G. S.X.
0.12 3e-34 147 At4g01720 828001 WRKY47 member of WRKY Transcription Factor; Group II-b C.G. S.X.
0.04 9e-10 65 At5g15130 831365 WRKY72 member of WRKY Transcription Factor; Group II-b C.G. S.X.
0.07 2e-7 57 At1g68150 843143 WRKY9 member of WRKY Transcription Factor; Group II-b C.G. S.X.
0.02 2e-4 48 At4g31800 829308 WRKY18 Pathogen-induced transcription factor. Binds W-box sequences in vitro. Forms protein complexes with itself and with WRKY40 and WRKY60. Constitutive expression of WRKY18 enhanced resistance to P. syringae, but its coexpression with WRKY40 or WRKY60 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two. C.G. S.X.
0.06 3e-3 44 At1g18860 838467 WRKY61 member of WRKY Transcription Factor; Group II-b C.G. S.X.
0.02 1e-2 42 At1g69810 843317 WRKY36 member of WRKY Transcription Factor; Group II-b C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.18 4e-28 127 Glycine max GmaAffx.83326.2.S1_at BU081884 WRKY34 protein - 2e-23 At4g22070 WRKY31 C.G. S.X.
0.02 6e+0 32 Hordeum vulgare EBro08_SQ008_K12_at EBro08_SQ008_K12 - - 7e+0 At5g47000 peroxidase, putative C.G. S.X.
0.09 1e-7 59 Oryza sativa Os01g0289600 9629.m01807 - DNA-binding WRKY domain containing protein 3e-4 At4g01720 WRKY47 C.G. S.X.
0.14 2e-26 121 Populus trichocarpa PtpAffx.217349.1.S1_at pmrna32570 hypothetical protein - 2e-26 At4g04450 WRKY42 C.G. S.X.
0.06 9e-7 56 Triticum aestivum Ta.5433.1.S1_a_at CA623872 - - 8e-16 At1g62300 WRKY6 C.G. S.X.
0.02 9e-1 34 Vitis vinifera 1618288_at CF202459.1 - - 3e-3 At1g01100 60S acidic ribosomal protein P1 (RPP1A) C.G. S.X.
0.02 5e+0 32 Zea mays Zm.8191.1.A1_at BM073226 hypothetical protein LOC100278647 - 2e+0 At4g09270 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage