CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g03520

Gene name ATHM2

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.37 45.0 At4g03520 825653 ATHM2 chloroplast localized thioredoxin, similar to prokaryotic types. S.X. H.G.
0.82 90.9 At1g69390 843271 ATMINE1 (Arabidopsis homologue of bacterial MinE 1) Encodes an Arabidopsis homologue of the bacterial MinE topological specificity factor ensuring correct division site placement. It is an essential integral component of the plastid division machinery. S.X. H.G.
0.71 84.2 At1g67280 843048 lactoylglutathione lyase, putative / glyoxalase I, putative F:lactoylglutathione lyase activity, metal ion binding;P:response to cold, carbohydrate metabolic process;C:thylakoid, thylakoid lumen, stromule, chloroplast, chloroplast stroma;BOMFPA S.X. H.G.
0.61 76.7 At5g49940 835057 NFU2 (NIFU-LIKE PROTEIN 2) Encodes a protein containing the NFU domain and functions as a molecular scaffold for iron-sulfur cluster assembly and delivery. Homologous to the cyanobacterial CNFU protein and is targeted to the chloroplast. S.X. H.G.
0.57 73.8 At1g09130 837432 ATP-dependent Clp protease proteolytic subunit, putative F:serine-type endopeptidase activity;P:proteolysis;C:in 6 components;BOPMFV S.X. H.G.
0.53 68.6 At4g14910 827149 imidazoleglycerol-phosphate dehydratase, putative F:imidazoleglycerol-phosphate dehydratase activity;P:histidine biosynthetic process;C:chloroplast;BOFAPM S.X. H.G.
0.50 65.3 At1g02560 839433 CLPP5 (NUCLEAR ENCODED CLP PROTEASE 5) One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001). S.X. H.G.
0.38 46.7 At1g63970 842700 ISPF Encodes a protein with 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity. The protein's activity was confirmed by heterologous expression of phenotypic complementation of the E. coli ispF mutant. Plants defective in this gene display an albino lethal phenotype.Homolog of E. coli IspF S.X. H.G.
0.37 45.0 At1g12410 837797 CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2) Encodes a ClpP-related sequence. Though similar to ClpP proteins, this does not contains the highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001). S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.4 97.8 GSM133730 Buchanan-Wollaston_A-2-bwoll-C5G_SLD GSE5727 The effects of mutants in stress response pathways on gene expression during senescence
4.3 97.7 E-MEXP-1304-raw-cel-1530620479
4.3 97.7 E-MEXP-1304-raw-cel-1530619991
4.3 97.7 GSM177126 gid1a-1 gid1b-1 gid1c-2 mock treated for 1 hr, replicate 2 GSE7353 Early GA response genes in Arabidopsis thaliana
4.2 97.6 GSM177127 gid1a-1 gid1b-1 gid1c-2 mock treated for 1 hr, replicate 3 GSE7353 Early GA response genes in Arabidopsis thaliana
4.0 97.5 GSM177130 gid1a-1 gid1b-1 gid1c-2 treated for 1 hr with 100 uM GA3, replicate 3 GSE7353 Early GA response genes in Arabidopsis thaliana
4.0 97.5 E-MEXP-509-raw-cel-829148276
4.0 97.5 E-MEXP-509-raw-cel-829148240
3.9 97.4 E-MEXP-1573-raw-cel-1617523329
3.9 97.4 E-MEXP-509-raw-cel-829148348
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.50 9e-60 230 At1g03680 839436 ATHM1 encodes a chloroplast thioredoxin similar to prokaryotic thioredoxins. C.G. S.X.
0.05 2e-5 50 At3g15360 820775 TRX-M4 (ARABIDOPSIS THIOREDOXIN M-TYPE 4) encodes a prokaryotic thioredoxin C.G. S.X.
0.04 4e-3 42 At4g35900 829744 FD bZIP protein required for positive regulation of flowering. Mutants are late flowering. FD interacts with FT to promote flowering.Expressed in the shoot apex in floral anlagen, then declines in floral primordia. C.G. S.X.
0.02 3e-1 36 At3g63520 825527 CCD1 (CAROTENOID CLEAVAGE DIOXYGENASE 1) Encodes a protein with 9-cis-epoxycarotenoid dioxygenase activity. The enzyme was shown to act on a variety of carotenoid including β-carotene, lutein, zeaxanthin, and all-trans-violaxanthin. When those compounds are used as substrates, the major reaction product detected is a C14 dialdehyde: 4,9-dimethyldodeca-2,4,6,8,10-pentaene-1,12-dial. The enzyme did not cleave as efficiently carotenoids containing 9-cis-double or allenic bonds. C.G. S.X.
0.02 3e-1 36 At2g23510 816883 SDT (SPERMIDINE DISINAPOYL ACYLTRANSFERASE) F:spermidine:sinapoyl CoA N-acyltransferase activity, sinapoyl spermidine:sinapoyl CoA N-acyltransferase activity, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO C.G. S.X.
0.04 3e-1 36 At1g31020 839988 ATO2 (Arabidopsis thioredoxin o2) F:unknown;P:cell redox homeostasis;C:unknown;BOMPFAV C.G. S.X.
0.02 1e+0 34 At5g50150 835080 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFB C.G. S.X.
0.01 1e+0 34 At5g11350 831006 endonuclease/exonuclease/phosphatase family protein F:catalytic activity;P:biological_process unknown;C:cellular_component unknown;MPFOBV C.G. S.X.
0.01 1e+0 34 At5g56360 835736 calmodulin-binding protein F:calmodulin binding;P:unknown;C:endomembrane system;MOBFPVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 2e+0 34 Glycine max Gma.16500.3.S1_a_at BM887344 - - 1e+0 At1g03680 ATHM1 C.G. S.X.
0.07 6e-7 54 Hordeum vulgare Contig9163_at Contig9163 - - 2e-6 At1g03680 ATHM1 C.G. S.X.
0.04 5e-1 36 Oryza sativa OsAffx.1008.1.S1_x_at - - - 0 C.G. S.X.
0.14 2e-2 40 Populus trichocarpa Ptp.6383.3.A1_at CK089693 hypothetical protein /// thioredoxin m /// thioredoxin m /// thioredoxin m /// thioredoxin m - 2e-2 At4g03520 ATHM2 C.G. S.X.
0.06 1e-6 54 Triticum aestivum Ta.6052.3.S1_at CD934002 - - 2e-6 At1g03680 ATHM1 C.G. S.X.
0.05 3e-4 44 Vitis vinifera 1614231_s_at CB970079 hypothetical protein LOC100245250 - 3e-5 At3g15360 TRX-M4 (ARABIDOPSIS THIOREDOXIN M-TYPE 4) C.G. S.X.
0.03 5e-1 34 Zea mays Zm.8268.1.S1_at CK826607 thioredoxin M-type - 1e-1 At5g39950 ATTRX2 (THIOREDOXIN 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0006979 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
X GO:0043085 Any process that activates or increases the activity of an enzyme.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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