CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g03500

Gene name ankyrin repeat family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g03500 827731 ankyrin repeat family protein F:protein binding;P:unknown;C:unknown;MOFPBVA S.X. H.G.
0.90 95.1 At1g75720 843906 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO S.X. H.G.
0.84 91.9 At1g68430 843172 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P S.X. H.G.
0.82 90.9 At3g24110 821997 calcium-binding EF hand family protein F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MPOFB S.X. H.G.
0.79 89.1 At5g26190 832688 DC1 domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:intracellular;POM S.X. H.G.
0.76 87.4 At3g05620 819728 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM S.X. H.G.
0.76 87.4 At2g34540 818017 unknown protein F:unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.75 86.9 At3g20570 821604 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;POBFMV S.X. H.G.
0.75 86.9 At5g03530 831810 RABC2A (RAB GTPASE HOMOLOG C2A) Encodes a member of the Rab GTPase family of proteins. This protein interacts with the tail region of a myosin XI protein (AT5G43900) in a GTP-dependent manner. CFP:RabC2a appears to co-localize with peroxisomes. S.X. H.G.
0.74 86.1 At5g01480 831674 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
570.0 100.0 GSM184906 Arabidopsis, root cells, protophloem, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
490.0 100.0 GSM184905 Arabidopsis, root cells, protophloem, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
459.3 100.0 GSM184904 Arabidopsis, root cells, protophloem, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
152.2 99.9 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
119.6 99.9 GSM184923 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
106.1 99.9 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
90.2 99.9 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
85.5 99.9 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
85.5 99.9 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
74.6 99.9 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.58 1e-114 414 At4g03460 827916 ankyrin repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVA C.G. S.X.
0.03 1e-6 56 At4g03490 827426 protein binding F:protein binding;P:unknown;C:unknown;MOFPBVA C.G. S.X.
0.03 4e-6 54 At4g03470 827915 ankyrin repeat family protein F:protein binding;P:unknown;C:unknown;MOPFBVA C.G. S.X.
0.13 1e-3 46 At1g03670 839438 ankyrin repeat family protein F:protein binding;P:unknown;C:unknown;MOFPBVA C.G. S.X.
0.02 4e-3 44 At4g05040 825846 ankyrin repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVA C.G. S.X.
0.06 2e-2 42 At4g03440 827920 ankyrin repeat family protein F:protein binding;P:unknown;C:unknown;MOPBFVA C.G. S.X.
0.04 2e-2 42 At4g03480 827906 protein binding F:protein binding;P:biological_process unknown;C:unknown;MOPFBVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e-3 46 Glycine max GmaAffx.20718.2.S1_at BQ299018 - - 2e-1 At4g03460 ankyrin repeat family protein C.G. S.X.
0.02 5e-1 36 Hordeum vulgare Contig12699_at Contig12699 - - 4e+0 At5g24655 LSU4 (RESPONSE TO LOW SULFUR 4) C.G. S.X.
0.01 2e+0 36 Oryza sativa Os01g0324200 CB684860 - SWIM Zn-finger domain containing protein 2e+0 At1g71200 DNA binding / transcription factor C.G. S.X.
0.02 1e+0 36 Populus trichocarpa PtpAffx.99938.1.A1_s_at BP937099 hypothetical protein - 2e+0 At4g21810 DER2.1 (DERLIN-2.1) C.G. S.X.
0.02 3e-1 38 Triticum aestivum TaAffx.16065.1.A1_at BQ168943 - - 1e+0 At1g43020 unknown protein C.G. S.X.
0.02 3e-1 36 Vitis vinifera 1622741_at CB343444 - - 2e-1 At4g05040 ankyrin repeat family protein C.G. S.X.
0.01 4e-1 36 Zea mays Zm.9111.1.A1_a_at CB351192 - - 4e-1 At4g27270 quinone reductase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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