Gene omics information

Query gene ID At4g03330
Gene name SYP123 (SYNTAXIN OF PLANTS 123)
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5773.8At4g03330827970SYP123 (SYNTAXIN OF PLANTS 123)member of SYP12 Gene FamilyS.X.H.G.
0.6075.7At1g16440838214kinaseF:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MOPFBVAS.X.H.G.
0.5368.6At3g07900819981unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PS.X.H.G.
0.4659.8At1g27740839667basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFOS.X.H.G.
0.4659.8At1g69240843255MES15 (METHYL ESTERASE 15)Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco but no enzymatic activity has been identified for this protein.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
302.7100.0GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
152.099.9GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.083e-1169At1g61290842423SYP124 (SYNTAXIN OF PLANTS 124)member of SYP12 Gene FamilyC.G.S.X.
0.123e-550At1g11250837666SYP125 (SYNTAXIN OF PLANTS 125)member of SYP12 Gene FamilyC.G.S.X.
0.067e-342At1g08560837378SYP111 (SYNTAXIN OF PLANTS 111)member of SYP11 Gene FamilyC.G.S.X.
0.021e-138At2g40470818641LBD15 (LOB DOMAIN-CONTAINING PROTEIN 15)F:unknown;P:biological_process unknown;C:cellular_component unknown;PMC.G.S.X.
0.025e-136At5g45600834599GAS41The GSA41 human homolog is expressed in nuclei and binds NuMA, a component of the nuclear matrix in interphase nuclei. In addition to Arabidopsis, GSA41 is found in Drosophila, C.elegans, yeast and man.C.G.S.X.
0.012e+034At5g62310836352IRE (INCOMPLETE ROOT HAIR ELONGATION)Encodes a protein with a serine/threonine kinase domain. There are two other closely related members in Arabidopsis. Knock-out mutation results in incomplete root hair elongation. Expression is found all organs examined but is especially strong in elongating root hairs.C.G.S.X.
0.012e+034At2g28070817351ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:unknown;C:plasma membrane;BOMAFPVC.G.S.X.
0.012e+034At2g17210816226pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:N-terminal protein myristoylation;C:unknown;POMFBC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.042e-138Glycine maxGmaAffx.25145.1.A1_atAW830552--2e-23At1g08560SYP111 (SYNTAXIN OF PLANTS 111)C.G.S.X.
0.023e+032Hordeum vulgareContig24755_atContig24755--2e-6At4g33060peptidyl-prolyl cis-trans isomerase cyclophilin-type family proteinC.G.S.X.
0.092e-448Oryza sativaOs06g0590500AK107080.1-Syntaxin 121 (AtSYP121) (Syntaxin-related proteinAt-Syr1)2e-4At4g03330SYP123 (SYNTAXIN OF PLANTS 123)C.G.S.X.
0.033e+034Populus trichocarpaPtpAffx.213392.1.S1_atpmrna26200hypothetical protein-3e-11At3g52400SYP122 (SYNTAXIN OF PLANTS 122)C.G.S.X.
0.033e-240Triticum aestivumTa.15918.1.S1_atCA501114--1e+0At1g50080unknown proteinC.G.S.X.
0.045e-134Vitis vinifera1614519_atCF511427hypothetical protein LOC100243614-4e-6At5g44230pentatricopeptide (PPR) repeat-containing proteinC.G.S.X.
0.031e-550Zea maysZm.4845.1.S1_atCD442886alcohol dehydrogenase1 /// syntaxin-related protein KNOLLE-4e-5At4g03330SYP123 (SYNTAXIN OF PLANTS 123)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
SGO:0006886The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
SGO:0006944The joining of two lipid bilayers to form a single membrane.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

04130Link to KEGG PATHWAYSNARE interactions in vesicular transport
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