Gene omics information

Query gene ID At4g03290
Gene name calcium-binding protein, putative
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At4g03290827993calcium-binding protein, putativeF:calcium ion binding;P:response to cold;C:nucleus;MFPOBS.X.H.G.
0.6982.9At4g28280828943unknown proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PS.X.H.G.
0.6176.7At3g62180825391invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.6176.7At3g05930819762GLP8 (GERMIN-LIKE PROTEIN 8)germin-like protein (GLP8)S.X.H.G.
0.6176.7At5g25340832606unknown proteinF:molecular_function unknown;P:unknown;C:cellular_component unknown;MPOS.X.H.G.
0.5469.5At2g45800819188LIM domain-containing proteinF:zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOPFS.X.H.G.
0.5267.4At2g02140814745LCR72 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 72)Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.S.X.H.G.
0.5267.4At2g33460817911RIC1 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 1)encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Interacts with Rop1 and is involved in pollen tube growth and function. Protein most similar to RIC3(family subgroup III). RIC1 is localized to the apical region of the plasma membrane in pollen tube and mutation analyses indicate that this localization is dependent on ROP1 binding. Gene is expressed in all tissues examined.Analysis of overexpression and loss of function mutants indicates a role in cortical microtubule organization during pavement cell morphogenesis.S.X.H.G.
0.5267.4At5g26700832719germin-like protein, putativeF:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PBFOAMS.X.H.G.
0.5065.3At5g58050835917SVL4 (SHV3-LIKE 4)F:kinase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:anchored to membrane;BPOMFS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
193.4100.0GSM239251Columbia glabrous (C24) wild type pollenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
163.699.9GSM154506Arabidopsis hydrated pollen grains rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
141.299.9GSM239253CaMV::DME pollenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
140.499.9GSM131636ATGE_73_AGSE5632AtGenExpress: Developmental series (flowers and pollen)
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.658e-69260At1g05990837108calcium-binding protein, putativeF:calcium ion binding;P:unknown;C:cellular_component unknown;MFPOBC.G.S.X.
0.312e-2099At2g43290818931MSS3 (multicopy suppressors of snf4 deficiency in yeast 3)Encodes calmodulin-like MSS3.C.G.S.X.
0.174e-652At4g12860826898UNE14 (unfertilized embryo sac 14)F:calcium ion binding;P:double fertilization forming a zygote and endosperm;C:cellular_component unknown;MOPFBC.G.S.X.
0.192e-550At3g59440825113calcium-binding protein, putativeF:calcium ion binding;P:biological_process unknown;C:endomembrane system;MFPOBVC.G.S.X.
0.311e-240At3g07490819937AGD11 (ARF-GAP domain 11)A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.C.G.S.X.
0.061e-240At1g66400842958calmodulin-related protein, putativeF:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MFPOBVC.G.S.X.
0.026e-238At4g36070829763CPK18member of Calcium Dependent Protein KinaseC.G.S.X.
0.042e-136At3g56800824847CAM3 (CALMODULIN 3)encodes a calmodulinC.G.S.X.
0.022e-136At3g56930824860zinc finger (DHHC type) family proteinF:zinc ion binding;P:biological_process unknown;C:plasma membrane;MOFPVC.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.142e-240Glycine maxGma.18059.1.S1_atAW348689--3e-11At1g05990calcium-binding protein, putativeC.G.S.X.
0.064e-134Hordeum vulgareContig1339_atContig1339--4e-66At3g56800CAM3 (CALMODULIN 3)C.G.S.X.
0.151e-1067Oryza sativaOs12g0228800AK064732.1-Calmodulin-like protein9e-11At4g03290calcium-binding protein, putativeC.G.S.X.
0.119e-1167Populus trichocarpaPtpAffx.50897.1.S1_atCV246026--2e-16At3g07490AGD11 (ARF-GAP domain 11)C.G.S.X.
0.044e+032Triticum aestivumTaAffx.113236.1.S1_atCA626069--6e-30At3g43810CAM7 (CALMODULIN 7)C.G.S.X.
0.073e-134Vitis vinifera1610944_atBQ794641hypothetical protein LOC100261610-1e-103At5g21274CAM6 (CALMODULIN 6)C.G.S.X.
0.056e+030Zea maysZmAffx.335.1.A1_atAI670522--7e-2At3g13130unknown proteinC.G.S.X.
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Biological processes

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ECCGO IDProcess Name
XGO:0009409A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
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Metabolic pathways

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KaPPA-View IDLink to Kappa-ViewPathway Name

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