CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g03290

Gene name calcium-binding protein, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g03290 827993 calcium-binding protein, putative F:calcium ion binding;P:response to cold;C:nucleus;MFPOB S.X. H.G.
0.69 82.9 At4g28280 828943 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P S.X. H.G.
0.61 76.7 At3g62180 825391 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.61 76.7 At3g05930 819762 GLP8 (GERMIN-LIKE PROTEIN 8) germin-like protein (GLP8) S.X. H.G.
0.61 76.7 At5g25340 832606 unknown protein F:molecular_function unknown;P:unknown;C:cellular_component unknown;MPO S.X. H.G.
0.54 69.5 At2g45800 819188 LIM domain-containing protein F:zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOPF S.X. H.G.
0.52 67.4 At2g02140 814745 LCR72 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 72) Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2. S.X. H.G.
0.52 67.4 At2g33460 817911 RIC1 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 1) encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Interacts with Rop1 and is involved in pollen tube growth and function. Protein most similar to RIC3(family subgroup III). RIC1 is localized to the apical region of the plasma membrane in pollen tube and mutation analyses indicate that this localization is dependent on ROP1 binding. Gene is expressed in all tissues examined.Analysis of overexpression and loss of function mutants indicates a role in cortical microtubule organization during pavement cell morphogenesis. S.X. H.G.
0.52 67.4 At5g26700 832719 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PBFOAM S.X. H.G.
0.50 65.3 At5g58050 835917 SVL4 (SHV3-LIKE 4) F:kinase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:anchored to membrane;BPOMF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
200.3 100.0 E-MEXP-1138-raw-cel-1432772906
193.4 100.0 GSM239251 Columbia glabrous (C24) wild type pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
190.1 100.0 E-MEXP-1138-raw-cel-1432772810
163.6 99.9 GSM154506 Arabidopsis hydrated pollen grains rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
161.0 99.9 E-MEXP-1138-raw-cel-1432772874
153.5 99.9 E-MEXP-1138-raw-cel-1432772714
150.5 99.9 E-MEXP-1138-raw-cel-1432773098
143.7 99.9 E-MEXP-1138-raw-cel-1432772778
141.2 99.9 GSM239253 CaMV::DME pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
140.4 99.9 GSM131636 ATGE_73_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.65 8e-69 260 At1g05990 837108 calcium-binding protein, putative F:calcium ion binding;P:unknown;C:cellular_component unknown;MFPOB C.G. S.X.
0.31 2e-20 99 At2g43290 818931 MSS3 (multicopy suppressors of snf4 deficiency in yeast 3) Encodes calmodulin-like MSS3. C.G. S.X.
0.17 4e-6 52 At4g12860 826898 UNE14 (unfertilized embryo sac 14) F:calcium ion binding;P:double fertilization forming a zygote and endosperm;C:cellular_component unknown;MOPFB C.G. S.X.
0.19 2e-5 50 At3g59440 825113 calcium-binding protein, putative F:calcium ion binding;P:biological_process unknown;C:endomembrane system;MFPOBV C.G. S.X.
0.31 1e-2 40 At3g07490 819937 AGD11 (ARF-GAP domain 11) A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. C.G. S.X.
0.06 1e-2 40 At1g66400 842958 calmodulin-related protein, putative F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MFPOBV C.G. S.X.
0.02 6e-2 38 At4g36070 829763 CPK18 member of Calcium Dependent Protein Kinase C.G. S.X.
0.04 2e-1 36 At3g56800 824847 CAM3 (CALMODULIN 3) encodes a calmodulin C.G. S.X.
0.02 2e-1 36 At3g56930 824860 zinc finger (DHHC type) family protein F:zinc ion binding;P:biological_process unknown;C:plasma membrane;MOFPV C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 2e-2 40 Glycine max Gma.18059.1.S1_at AW348689 - - 3e-11 At1g05990 calcium-binding protein, putative C.G. S.X.
0.06 4e-1 34 Hordeum vulgare Contig1339_at Contig1339 - - 4e-66 At3g56800 CAM3 (CALMODULIN 3) C.G. S.X.
0.15 1e-10 67 Oryza sativa Os12g0228800 AK064732.1 - Calmodulin-like protein 9e-11 At4g03290 calcium-binding protein, putative C.G. S.X.
0.11 9e-11 67 Populus trichocarpa PtpAffx.50897.1.S1_at CV246026 - - 2e-16 At3g07490 AGD11 (ARF-GAP domain 11) C.G. S.X.
0.04 4e+0 32 Triticum aestivum TaAffx.113236.1.S1_at CA626069 - - 6e-30 At3g43810 CAM7 (CALMODULIN 7) C.G. S.X.
0.07 3e-1 34 Vitis vinifera 1610944_at BQ794641 hypothetical protein LOC100261610 - 1e-103 At5g21274 CAM6 (CALMODULIN 6) C.G. S.X.
0.05 6e+0 30 Zea mays ZmAffx.335.1.A1_at AI670522 - - 7e-2 At3g13130 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009409 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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