Gene omics information

Query gene ID At4g03190
Gene name GRH1 (GRR1-LIKE PROTEIN 1)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4050.8At4g03190828045GRH1 (GRR1-LIKE PROTEIN 1)Encodes an F box protein belonging to the TIR1 subfamily. This protein forms SCF complexes with ASK1 and CUL1 and interacts with Aux/IAA proteins in an auxin-dependent manner. It also has sequence similarity to the yeast protein GRR1, which is involved in glucose repression.S.X.H.G.
0.5065.3At5g15580831411LNG1 (LONGIFOLIA1)Encodes LONGIFOLIA1 (LNG1). Regulates leaf morphology by promoting cell expansion in the leaf-length direction. The LNG1 homologue LNG2 (At3g02170) has similar function.S.X.H.G.
0.5065.3At5g19340832054unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMFBVS.X.H.G.
0.4457.2At2g24300816966calmodulin-binding proteinF:calmodulin binding;P:biological_process unknown;C:unknown;PBS.X.H.G.
0.4050.8At1g10120837549DNA binding / transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOBS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
69.599.9GSM133981Birnbaum_1-11_StageII-4_Rep4_ATH1GSE5749A gene expression map of the Arabidopsis root
68.699.9GSM133979Birnbaum_1-9_StageII-2_Rep2_ATH1GSE5749A gene expression map of the Arabidopsis root
66.599.8GSM133980Birnbaum_1-10_StageII-3_Rep3_ATH1GSE5749A gene expression map of the Arabidopsis root
54.899.8GSM252690Section of Root from 270 mm to 340 mm harvested immediately rep1GSE9996Organ regeneration in plants is independent of stem cell niche activity
50.899.8GSM184909Arabidopsis, root cells, epidermis and lateral root cap, 140 mM NaCl, replicate 3GSE7641Expression analysis of root cell-types after treatment with salt
46.799.8GSM184530Stele root cells 2hr continuous KNO3 treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis root
44.699.8GSM133978Birnbaum_1-8_StageII-1_Rep1_ATH1GSE5749A gene expression map of the Arabidopsis root
41.299.8GSM265420Arabidopsis, root, longitudinal zone 2, standard conditions, rep 1GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
40.899.8GSM252691Section of Root from 270 mm to 340 mm harvested immediately rep2GSE9996Organ regeneration in plants is independent of stem cell niche activity
40.899.8GSM184895Arabidopsis, root cells, cortex, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with salt
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.147e-1479At3g62980825473TIR1 (TRANSPORT INHIBITOR RESPONSE 1)Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation.C.G.S.X.
0.034e-344At1g12820837838AFB3 (AUXIN SIGNALING F-BOX 3)F:auxin binding, ubiquitin-protein ligase activity;P:stamen development, pollen maturation, response to molecule of bacterial origin;C:cellular_component unknown;PMFOBC.G.S.X.
0.036e-240At3g26810822296AFB2 (AUXIN SIGNALING F-BOX 2)F:auxin binding, ubiquitin-protein ligase activity;P:stamen development, pollen maturation, response to molecule of bacterial origin;C:plasma membrane;PMOFBC.G.S.X.
0.012e-138At3g53290824496CYP71B30Pmissing N-term 80 AA not found between end of 71B5 and start of this sequence probably a pseudogene, from http://drnelson.utmem.edu/biblioD.htmlC.G.S.X.
0.019e-136At5g57345835840unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PBOC.G.S.X.
0.019e-136At4g34340829584TAF8 (TBP-ASSOCIATED FACTOR 8)F:DNA binding;P:biological_process unknown;C:cellular_component unknown;MPFOC.G.S.X.
0.019e-136At3g07810819972heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putativeF:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MBOPFVAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.072e-1481Glycine maxGma.1557.1.S1_a_atBE823244--7e-21At3g62980TIR1 (TRANSPORT INHIBITOR RESPONSE 1)C.G.S.X.
0.032e+034Hordeum vulgareContig10247_atContig10247--2e-8At5g49980AFB5 (Auxin F-Box protein 5)C.G.S.X.
0.045e-757Oryza sativaOs.10149.1.S1_at---0C.G.S.X.
0.079e-1479Populus trichocarpaPtpAffx.102029.1.A1_atCV240650--4e-35At3g62980TIR1 (TRANSPORT INHIBITOR RESPONSE 1)C.G.S.X.
0.036e-859Triticum aestivumTa.23215.1.S1_atCD452856--1e-10At3g62980TIR1 (TRANSPORT INHIBITOR RESPONSE 1)C.G.S.X.
0.037e-548Vitis vinifera1618982_atCF413816hypothetical protein LOC100264085-2e-2At1g29390COR314-TM2C.G.S.X.
0.042e-963Zea maysZm.17222.1.A1_atCK144311--2e-13At3g62980TIR1 (TRANSPORT INHIBITOR RESPONSE 1)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0010152The final stages of microgametogenesis after the trinucleate stage has been reached resulting in viable pollen grains.
XGO:0048443The process whose specific outcome is the progression of the stamen over time, from its formation to the mature structure.
XGO:0002237A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus by molecules of bacterial origin such as peptides derived from bacterial flagellin.
XGO:0009733A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus.
XGO:0006511The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein.
XGO:0048589The increase in size or mass of an entire organism, a part of an organism or a cell, where the increase in size or mass has the specific outcome of the progression of the organism over time from one condition to another.
SGO:0045014Any process involving glucose that stops, prevents or reduces the rate of transcription. The presence of glucose in the growth medium inhibits the synthesis of certain enzymes in bacteria growing on the medium. For example, transcription of some catabolic operons is under negative control by specific repressors and glucose is an anti-inducer of xylose utilization and glycerol kinase.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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