Gene omics information

Query gene ID At4g03180
Gene name unknown protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.135.8At4g03180828047unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBAS.X.H.G.
0.4050.8At3g24080821994KRR1 family proteinF:molecular_function unknown;P:response to salt stress;C:cytosol;MOFBPVAS.X.H.G.
0.3235.7At1g28350839731ATP binding / aminoacyl-tRNA ligase/ nucleotide binding / tyrosine-tRNA ligaseF:tyrosine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding;P:translation, tyrosyl-tRNA aminoacylation, tRNA aminoacylation for protein translation;C:cytoplasm;BOMAFPVS.X.H.G.
0.2726.2At1g70980843436SYNC3F:in 6 functions;P:asparaginyl-tRNA aminoacylation, aspartyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:cytoplasm;BOMFAPS.X.H.G.
0.2522.6At2g19480816467NAP1This gene is predicted to encode a nucleosome assembly protein. Plant lines expressing an RNAi construct directed against this gene show a reduction in agrobacterium-mediated root transformation.S.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
76.499.9GSM284395Arabidopsis GPSc1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
63.499.8GSM311282Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
52.299.8GSM311274Laser capture microdissected (LCM) embryo proper at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
52.199.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
47.799.8GSM311273Laser capture microdissected (LCM) embryo proper at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
39.299.8GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
31.099.7GSM311283Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
29.399.7GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
28.699.7GSM311291Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
27.299.7GSM311284Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.017e-238At5g39970833994catalyticF:catalytic activity;P:biological_process unknown;C:anchored to membrane;OBPMAFC.G.S.X.
0.027e-238At3g19680821505unknown proteinF:unknown;P:unknown;C:plasma membrane;OPMBFC.G.S.X.
0.027e-238At2g40290818621eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putativeF:RNA binding, translation initiation factor activity;P:translation;C:nucleus;BOMAFPVC.G.S.X.
0.047e-238At1g02450837800NIMIN1 (NIM1-INTERACTING 1)NIMIN1 modulates PR gene expression according the following model: NPR1 forms a ternary complex with NIMIN1 and TGA factors upon SAR induction that binds to a positive regulatory cis-element of the PR-1 promoter, termed LS7. This leads to PR-1 gene induction. NIMIN1 decreases transcriptional activation, possibly through its EAR motif, which results in fine-tuning of PR-1 gene expression.C.G.S.X.
0.023e-136At5g67380836873CKA1 (CASEIN KINASE ALPHA 1)casein kinase II catalytic subunit alphaC.G.S.X.
0.013e-136At5g55040835595DNA bindingF:DNA binding;P:biological_process unknown;C:mitochondrion;MOFPBVAC.G.S.X.
0.013e-136At5g03450831835zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MOPFVBAC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.044e-136Glycine maxGmaAffx.38155.1.S1_atBU926825--2e-1At4g03180unknown proteinC.G.S.X.
0.048e-340Hordeum vulgareContig15960_atContig15960--3e-2At4g03180unknown proteinC.G.S.X.
0.041e-448Oryza sativaOs12g0538100AK109170.1-Hypothetical protein1e-4At4g03180unknown proteinC.G.S.X.
0.144e-756Populus trichocarpaPtpAffx.157464.1.S1_atBU828886hypothetical protein-4e-7At4g03180unknown proteinC.G.S.X.
0.055e-342Triticum aestivumTa.1805.2.S1_a_atCA662485--5e-3At4g03180unknown proteinC.G.S.X.
0.074e-1063Vitis vinifera1619397_atCA818744hypothetical protein LOC100254601-1e-9At4g03180unknown proteinC.G.S.X.
0.032e+032Zea maysZmAffx.1055.1.A1_atAI881878--5e-2At4g01940NFU1C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage