CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g03170

Gene name DNA binding

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.33 38.1 At4g03170 828050 DNA binding F:DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;OPMF S.X. H.G.
0.70 83.5 At3g30730 822811 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.67 81.6 At3g04390 819594 xanthine dehydrogenase family protein F:electron carrier activity, oxidoreductase activity, catalytic activity;P:biological_process unknown;C:endomembrane system;MOBFP S.X. H.G.
0.67 81.6 At3g61720 825345 C2 domain-containing protein F:unknown;P:tryptophan biosynthetic process;C:unknown;PMOF S.X. H.G.
0.63 78.1 At5g30440 3770957 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.63 78.1 At4g15710 827248 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.56 73.0 At1g29480 839825 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBP S.X. H.G.
0.40 50.8 At1g36670 840575 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.40 50.8 At5g28950 833021 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMF S.X. H.G.
0.30 32.1 At1g47350 841138 F-box family protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
565.0 100.0 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
348.1 100.0 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
339.5 100.0 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
316.5 100.0 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
262.3 100.0 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
262.0 100.0 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
241.4 100.0 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
231.8 100.0 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
219.2 100.0 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
218.3 100.0 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.82 0 737 At1g20600 838649 DNA-binding protein-related F:DNA binding;P:regulation of transcription, DNA-dependent;C:membrane;PMO C.G. S.X.
0.12 4e-10 65 At4g03160 828054 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF C.G. S.X.
0.01 2e-2 40 At4g11810 826787 SPX (SYG1/Pho81/XPR1) domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BFOPMA C.G. S.X.
0.02 9e-2 38 At3g11380 820310 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;POMBF C.G. S.X.
0.01 4e-1 36 At3g07540 819943 formin homology 2 domain-containing protein / FH2 domain-containing protein F:actin binding;P:cellular component organization, actin cytoskeleton organization;C:plasma membrane;MOPFBV C.G. S.X.
0.03 2e+0 34 At5g09978 5008207 PEP7 (ELICITOR PEPTIDE 7 PRECURSOR) F:unknown;P:unknown;C:unknown;P C.G. S.X.
0.02 2e+0 34 At5g65280 836653 GCL1 (GCR2-LIKE 1) Encodes a protein with reported similarity to GCR2 a putative G protein coupled receptor thought to be an ABA receptor. Loss of function mutations in GCL1 show no ABA response defects based on assays of seed germination and seedling development.GCL1 also has similarity to LANCL1 and LANCL2, human homologs of bacterial lanthionine synthetase. C.G. S.X.
0.02 2e+0 34 At5g05140 830396 transcription elongation factor-related F:protein binding, transcription regulator activity, DNA binding;P:transcription;C:nucleus;MPOFB C.G. S.X.
0.01 2e+0 34 At5g24550 832526 BGLU32 (BETA GLUCOSIDASE 32) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:response to other organism;C:endomembrane system;BOPMFA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e-1 36 Glycine max GmaAffx.85333.1.S1_at BE211587 - - 6e-2 At3g49470 NACA2 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2) C.G. S.X.
0.03 3e+0 32 Hordeum vulgare Contig19513_at Contig19513 - - 3e-1 At2g21237 unknown protein C.G. S.X.
0.02 3e+0 34 Oryza sativa OsAffx.28048.3.A1_at - - - 0 C.G. S.X.
0.04 1e-1 38 Populus trichocarpa PtpAffx.9487.1.A1_at BU876574 hypothetical protein - 4e-10 At1g12240 ATBETAFRUCT4 C.G. S.X.
0.03 2e+0 34 Triticum aestivum Ta.14736.1.S1_at CA681222 - - 2e-2 At5g50810 TIM8 C.G. S.X.
0.03 1e-1 36 Vitis vinifera 1622749_at CD715377 hypothetical protein LOC100253671 - 8e-1 At5g09978 PEP7 (ELICITOR PEPTIDE 7 PRECURSOR) C.G. S.X.
0.02 6e-1 34 Zea mays Zm.4307.1.A1_at BM333161 - - 1e+0 At4g03170 DNA binding C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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