CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g03153

Gene name kinase interacting family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g03153 828056 kinase interacting family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBA S.X. H.G.
0.47 61.2 At1g48060 841224 F-box family protein F:molecular_function unknown;P:unknown;C:unknown;P S.X. H.G.
0.31 33.8 At1g07460 837258 legume lectin family protein F:carbohydrate binding, sugar binding;P:biological_process unknown;C:anchored to membrane;PBO S.X. H.G.
0.28 30.3 At5g28940 833020 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.23 19.3 At1g66170 842932 MMD1 (MALE MEIOCYTE DEATH 1) encodes a PHD-domain containing protein required for male meiosis. Gene is expressed in developing male meiocytes and protein is localized to the nucleus. S.X. H.G.
0.23 19.3 At4g03160 828054 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF S.X. H.G.
0.22 17.5 At5g14900 831342 helicase associated (HA2) domain-containing protein F:helicase activity;P:biological_process unknown;C:cellular_component unknown;MBFOP S.X. H.G.
0.19 12.7 At1g78470 844183 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.16 8.8 At2g07300 815300 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.14 6.8 At5g34840 3771203 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
394.7 100.0 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
338.0 100.0 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
320.7 100.0 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
267.8 100.0 GSM133766 Lindsey_1-18_torpedo-root_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
214.1 100.0 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
206.9 100.0 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
193.6 100.0 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
193.1 100.0 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
179.6 100.0 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
178.3 100.0 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.18 1e-22 107 At1g03470 839494 kinase interacting family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBAV C.G. S.X.
0.03 8e-2 38 At3g13650 820569 disease resistance response F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P C.G. S.X.
0.01 3e-1 36 At5g15450 831398 CLPB3 (CASEIN LYTIC PROTEINASE B3) Encodes a chloroplast-targeted Hsp101 homologue. Functions as a molecular chaperone involved in plastid differentiation mediating internal thylakoid membrane formation and conferring thermotolerance to chloroplasts during heat stress. APG6 is constitutively expressed in the root tips, the organ boundary region, the reproductive tissues of mature plants where plastids exist as proplastids, and slightly in the stems and leaves. APG6 expression is upregulated in response to heat shock in various organs, but not in response to other abiotic stresses. Apg6 mutants have a pale-green phenotype. C.G. S.X.
0.02 3e-1 36 At4g04700 825805 CPK27 member of Calcium Dependent Protein Kinase C.G. S.X.
0.01 3e-1 36 At3g56150 824781 EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C) member of eIF3c - eukaryotic initiation factor 3c C.G. S.X.
0.01 3e-1 36 At1g08600 837382 ATRX F:helicase activity, DNA binding, nucleic acid binding, ATP binding;P:unknown;C:unknown;MOBFPVA C.G. S.X.
0.01 3e-1 36 At1g66170 842932 MMD1 (MALE MEIOCYTE DEATH 1) encodes a PHD-domain containing protein required for male meiosis. Gene is expressed in developing male meiocytes and protein is localized to the nucleus. C.G. S.X.
0.02 1e+0 34 At5g38300 833812 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 34 Glycine max Gma.4872.1.A1_at BI969530 - - 2e-1 At3g13650 disease resistance response C.G. S.X.
0.03 2e+0 32 Hordeum vulgare Contig14299_at Contig14299 - - 9e-1 At4g15955 epoxide hydrolase-related C.G. S.X.
0.02 6e-1 36 Oryza sativa Os12g0592900 AK072653.1 - Hypothetical protein 1e-4 At5g63610 CDKE C.G. S.X.
0.03 2e+0 34 Populus trichocarpa PtpAffx.57301.1.A1_at CV231372 - - 2e+0 At4g03153 kinase interacting family protein C.G. S.X.
0.03 5e+0 32 Triticum aestivum TaAffx.79150.1.S1_x_at CA720712 - - 3e+0 At5g17650 glycine/proline-rich protein C.G. S.X.
0.04 4e-1 34 Vitis vinifera 1615270_at CF208284 similar to Callose synthase 3 - 3e-21 At5g13000 ATGSL12 (glucan synthase-like 12) C.G. S.X.
0.03 5e-1 34 Zea mays Zm.7662.1.A1_at AY108845.1 - - 1e+0 At4g03153 kinase interacting family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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