Gene omics information

Query gene ID At4g03060
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At4g03060828102AOP2 (ALKENYL HYDROXALKYL PRODUCING 2)Encodes a truncated and null function protein, due to a 5-bp deletion in cDNA. The functional allele in ecotype Cvi, AOP2, encodes a 2-oxoglutarate-dependent dioxygenase which is involved in glucosinolate biosynthesis. The natural variation in this locus explains the diversification of alkenyl glucosinolate among different ecotypes of Arabidopsis.S.X.H.G.
0.5773.8At5g10140830878FLC (FLOWERING LOCUS C)MADS-box protein encoded by FLOWERING LOCUS C - transcription factor that functions as a repressor of floral transition and contributes to temperature compensation of the circadian clock. Expression is downregulated during cold treatment. Vernalization, FRI and the autonomous pathway all influence the state of FLC chromatin. Both maternal and paternal alleles are reset by vernalization, but their earliest activation differs in timing and location. Histone H3 trimethylation at lysine 4 and histone acetylation are associated with active FLC expression, whereas histone deacetylation and histone H3 dimethylation at lysines 9 and 27 are involved in FLC repression. Expression is also repressed by two small RNAs (30- and 24-nt) complementary to the FLC sense strand 3 to the polyA site. The small RNAs are most likely derived from an antisense transcript of FLC. Interacts with SOC1 and FT chromatin in vivo. Member of a protein complex.S.X.H.G.
0.3338.1At3g58990825068aconitase C-terminal domain-containing proteinF:hydro-lyase activity, 3-isopropylmalate dehydratase activity;P:leucine biosynthetic process, metabolic process;C:3-isopropylmalate dehydratase complex, chloroplast;BOFAPMS.X.H.G.
0.3338.1At4g12030826811bile acid:sodium symporter family proteinF:transporter activity, bile acid:sodium symporter activity;P:sodium ion transport;C:membrane;OBMPAS.X.H.G.
0.020.4At1g28610839761GDSL-motif lipase, putativeF:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBMS.X.H.G.
0.000.0At3g21950821753methyltransferaseF:methyltransferase activity;P:response to cadmium ion;C:cellular_component unknown;POBMFS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.565e-56218At4g03050828104AOP3Transcriptional silent in leaf tissues of ecotype Col. The transcribed allele in ecotype Ler encodes a 2-oxoglutarate-dependent dioxygenase which is involved in glucosinolate biosynthesis. The natural variation in this locus explains the diversification of hydroxyalkyl glucosinolates among different ecotypes of Arabidopsis.C.G.S.X.
0.054e-446At4g03070828100AOP1Encodes a possible 2-oxoglutarate-dependent dioxygenase that is involved in glucosinolate biosynthesis. The gene is expressed in all ecotypes examined but the enzymatic activity has not been determined experimentally. In Col, there is one copy of this gene (aka AOP1.1) but Ler contains two copies, AOP1.1 and a tightly linked AOP1.2.C.G.S.X.
0.011e-138At3g48470824006EMB2423 (EMBRYO DEFECTIVE 2423)F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;MFPOC.G.S.X.
0.024e-136At5g57770835885-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBC.G.S.X.
0.014e-136At3g22980821872elongation factor Tu family proteinF:translation factor activity, nucleic acid binding, GTP binding, GTPase activity;P:biological_process unknown;C:cellular_component unknown;BOMFAPC.G.S.X.
0.024e-136At3g55870824753anthranilate synthase, alpha subunit, putativeF:oxo-acid-lyase activity, anthranilate synthase activity;P:tryptophan biosynthetic process, biosynthetic process;C:endomembrane system;BOFAPMC.G.S.X.
0.014e-136At3g49410824103unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVAC.G.S.X.
0.024e-136At1g03960839361calcium-binding EF hand family proteinF:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MOPC.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.051e-138Glycine maxHgAffx.18678.1.S1_atCA940490--4e+0At3g27968unknown proteinC.G.S.X.
0.043e+032Hordeum vulgareHVSMEl0003G02r2_atHVSMEl0003G02r2--1e-3At2g27550ATC (ARABIDOPSIS THALIANA CENTRORADIALIS)C.G.S.X.
0.028e-136Oryza sativaOs02g0436400AK065673.1-Dihydrodipicolinate reductase family protein5e-14At2g44040dihydrodipicolinate reductase family proteinC.G.S.X.
0.035e-136Populus trichocarpaPtpAffx.200225.1.S1_atpmrna424hypothetical protein-4e-1At4g03060AOP2 (ALKENYL HYDROXALKYL PRODUCING 2)C.G.S.X.
0.034e-136Triticum aestivumTaAffx.105427.1.S1_atCA734618--4e+0At4g31196electron carrier/ oxidoreductaseC.G.S.X.
0.041e-136Vitis vinifera1608804_atBQ796337hypothetical protein LOC100256426-7e-28At1g50430DWF5 (DWARF 5)C.G.S.X.
0.033e+032Zea maysZm.16327.1.S1_atAI941785Hypothetical protein LOC100216593-9e-7At1g07770RPS15A (ribosomal protein s15a)C.G.S.X.
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Biological processes

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ECCGO IDProcess Name
XGO:0019761The chemical reactions and pathways resulting in the formation of glucosinolates, substituted thioglucosides found in rapeseed products and related cruciferae.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00406Link to KaPPA-View 4Secondary modification of methylthioalkyl glucosinolate

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