Gene omics information

Query gene ID At4g02940
Gene name oxidoreductase, 2OG-Fe(II) oxygenase family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At4g02940828132oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity;P:biological_process unknown;C:unknown;POMFBS.X.H.G.
0.2522.6At4g05020825844NDB2 (NAD(P)H dehydrogenase B2)F:disulfide oxidoreductase activity, oxidoreductase activity, FAD binding;P:unknown;C:extrinsic to mitochondrial inner membrane, mitochondrion;BOFPAMS.X.H.G.
0.2522.6At5g17380831604pyruvate decarboxylase family proteinF:pyruvate decarboxylase activity, magnesium ion binding, thiamin pyrophosphate binding, transferase activity, catalytic activity;P:unknown;C:cellular_component unknown;OBFPAMVS.X.H.G.
0.114.1At2g34660818031ATMRP2 (ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 2)encodes a multidrug resistance-associated protein that is MgATP-energized glutathione S-conjugate pump. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim.S.X.H.G.
0.092.8At2g26230817163uricase / urate oxidase / nodulin 35, putativeF:urate oxidase activity;P:purine base metabolic process;C:peroxisome;BFMPOAS.X.H.G.
0.040.9At5g66760836809SDH1-1One of two genes in Arabidopsis that encode a flavoprotein subunit of the mitochondrial succinate dehydrogenase complex.S.X.H.G.
0.030.6At5g03290831884isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putativeF:isocitrate dehydrogenase (NAD+) activity, ATP binding;P:tricarboxylic acid cycle, metabolic process;C:mitochondrion, chloroplast;BOMFAPS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
146.999.9E-MEXP-1443-raw-cel-1581869745
109.499.9E-MEXP-1443-raw-cel-1581869803
95.099.9GSM204026protoplast_control_rep1GSE8248Identification of hypoxia-inducible genes in Arabidopsis mesophyll cells
67.899.9GSM131604ATGE_41_BGSE5632AtGenExpress: Developmental series (flowers and pollen)
52.299.8GSM75517slr-1 2h NAA replicate 1GSE3350SLR/IAA14-dependent auxin induced lateral root initiation
52.299.8GSM205160protoplast_controlDNA_rep2GSE8257Identification of KIN10-target genes in Arabidopsis mesophyll cells
49.499.8GSM131603ATGE_41_AGSE5632AtGenExpress: Developmental series (flowers and pollen)
42.499.8E-MEXP-1443-raw-cel-1581869515
39.299.8GSM284395Arabidopsis GPSc1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
37.399.7GSM131605ATGE_41_CGSE5632AtGenExpress: Developmental series (flowers and pollen)
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.132e-861At2g48080819420oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;PMOC.G.S.X.
0.015e-240At5g41780834183myosin heavy chain-relatedF:unknown;P:biological_process unknown;C:unknown;MOBFPAVC.G.S.X.
0.015e-240At3g51290824292proline-rich family proteinF:unknown;P:N-terminal protein myristoylation;C:unknown;MPOBFVAC.G.S.X.
0.025e-240At3g61930825366unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:unknown;PC.G.S.X.
0.015e-240At3g62110825384glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinF:polygalacturonase activity;P:response to cyclopentenone, carbohydrate metabolic process;C:vacuole;FPBOMAVC.G.S.X.
0.025e-240At1g20440838632COR47 (COLD-REGULATED 47)Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. Cold regulated gene, amino acid sequence homology with Group II LEA (late embryogenesis abundant) proteins. Also responds to osmotic stress, ABA, dehydration and inhibits e.coli growth while overexpressed. COR47 and RAB18 double overexpressor plants are cold tolerant.C.G.S.X.
0.022e-138At5g65130836637AP2 domain-containing transcription factor, putativeencodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.C.G.S.X.
0.012e-138At3g20910821640NF-YA9 (NUCLEAR FACTOR Y, SUBUNIT A9)F:transcription factor activity, specific transcriptional repressor activity;P:negative regulation of gene-specific transcription, regulation of transcription, DNA-dependent;C:CCAAT-binding factor complex, nucleus;PMFOC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.093e-1067Glycine maxGma.13663.1.S1_atBI969260--2e-10At4g02940oxidoreductase, 2OG-Fe(II) oxygenase family proteinC.G.S.X.
0.043e-859Hordeum vulgareContig7235_atContig7235--6e-8At4g02940oxidoreductase, 2OG-Fe(II) oxygenase family proteinC.G.S.X.
0.047e-963Oryza sativaOs05g0401500AK058850.1-2OG-Fe(II) oxygenase domain containing protein4e-9At4g02940oxidoreductase, 2OG-Fe(II) oxygenase family proteinC.G.S.X.
0.115e-654Populus trichocarpaPtpAffx.217511.1.S1_atpmrna32803hypothetical protein-9e-7At4g02940oxidoreductase, 2OG-Fe(II) oxygenase family proteinC.G.S.X.
0.044e-344Triticum aestivumTaAffx.31215.1.S1_atCA618463--1e-3At4g02940oxidoreductase, 2OG-Fe(II) oxygenase family proteinC.G.S.X.
0.026e-238Vitis vinifera1621840_atCB036000--4e-7At1g64890integral membrane transporter family proteinC.G.S.X.
0.034e-136Zea maysZm.2653.1.A1_atBM073552--7e+0At4g37409unknown proteinC.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage