CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g02940

Gene name oxidoreductase, 2OG-Fe(II) oxygenase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g02940 828132 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity;P:biological_process unknown;C:unknown;POMFB S.X. H.G.
0.25 22.6 At4g05020 825844 NDB2 (NAD(P)H dehydrogenase B2) F:disulfide oxidoreductase activity, oxidoreductase activity, FAD binding;P:unknown;C:extrinsic to mitochondrial inner membrane, mitochondrion;BOFPAM S.X. H.G.
0.25 22.6 At5g17380 831604 pyruvate decarboxylase family protein F:pyruvate decarboxylase activity, magnesium ion binding, thiamin pyrophosphate binding, transferase activity, catalytic activity;P:unknown;C:cellular_component unknown;OBFPAMV S.X. H.G.
0.11 4.1 At2g34660 818031 ATMRP2 (ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 2) encodes a multidrug resistance-associated protein that is MgATP-energized glutathione S-conjugate pump. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. S.X. H.G.
0.09 2.8 At2g26230 817163 uricase / urate oxidase / nodulin 35, putative F:urate oxidase activity;P:purine base metabolic process;C:peroxisome;BFMPOA S.X. H.G.
0.04 0.9 At5g66760 836809 SDH1-1 One of two genes in Arabidopsis that encode a flavoprotein subunit of the mitochondrial succinate dehydrogenase complex. S.X. H.G.
0.03 0.6 At5g03290 831884 isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative F:isocitrate dehydrogenase (NAD+) activity, ATP binding;P:tricarboxylic acid cycle, metabolic process;C:mitochondrion, chloroplast;BOMFAP S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
146.9 99.9 E-MEXP-1443-raw-cel-1581869745
109.4 99.9 E-MEXP-1443-raw-cel-1581869803
95.0 99.9 GSM204026 protoplast_control_rep1 GSE8248 Identification of hypoxia-inducible genes in Arabidopsis mesophyll cells
67.8 99.9 GSM131604 ATGE_41_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
52.2 99.8 GSM75517 slr-1 2h NAA replicate 1 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
52.2 99.8 GSM205160 protoplast_controlDNA_rep2 GSE8257 Identification of KIN10-target genes in Arabidopsis mesophyll cells
49.4 99.8 GSM131603 ATGE_41_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
42.4 99.8 E-MEXP-1443-raw-cel-1581869515
39.2 99.8 GSM284395 Arabidopsis GPSc1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
37.3 99.7 GSM131605 ATGE_41_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
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Homologous genes

Paralogous genes

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HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.13 2e-8 61 At2g48080 819420 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;PMO C.G. S.X.
0.01 5e-2 40 At5g41780 834183 myosin heavy chain-related F:unknown;P:biological_process unknown;C:unknown;MOBFPAV C.G. S.X.
0.01 5e-2 40 At3g51290 824292 proline-rich family protein F:unknown;P:N-terminal protein myristoylation;C:unknown;MPOBFVA C.G. S.X.
0.02 5e-2 40 At3g61930 825366 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:unknown;P C.G. S.X.
0.01 5e-2 40 At3g62110 825384 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:response to cyclopentenone, carbohydrate metabolic process;C:vacuole;FPBOMAV C.G. S.X.
0.02 5e-2 40 At1g20440 838632 COR47 (COLD-REGULATED 47) Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. Cold regulated gene, amino acid sequence homology with Group II LEA (late embryogenesis abundant) proteins. Also responds to osmotic stress, ABA, dehydration and inhibits e.coli growth while overexpressed. COR47 and RAB18 double overexpressor plants are cold tolerant. C.G. S.X.
0.02 2e-1 38 At5g65130 836637 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4. C.G. S.X.
0.01 2e-1 38 At3g20910 821640 NF-YA9 (NUCLEAR FACTOR Y, SUBUNIT A9) F:transcription factor activity, specific transcriptional repressor activity;P:negative regulation of gene-specific transcription, regulation of transcription, DNA-dependent;C:CCAAT-binding factor complex, nucleus;PMFO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 3e-10 67 Glycine max Gma.13663.1.S1_at BI969260 - - 2e-10 At4g02940 oxidoreductase, 2OG-Fe(II) oxygenase family protein C.G. S.X.
0.04 3e-8 59 Hordeum vulgare Contig7235_at Contig7235 - - 6e-8 At4g02940 oxidoreductase, 2OG-Fe(II) oxygenase family protein C.G. S.X.
0.04 7e-9 63 Oryza sativa Os05g0401500 AK058850.1 - 2OG-Fe(II) oxygenase domain containing protein 4e-9 At4g02940 oxidoreductase, 2OG-Fe(II) oxygenase family protein C.G. S.X.
0.11 5e-6 54 Populus trichocarpa PtpAffx.217511.1.S1_at pmrna32803 hypothetical protein - 9e-7 At4g02940 oxidoreductase, 2OG-Fe(II) oxygenase family protein C.G. S.X.
0.04 4e-3 44 Triticum aestivum TaAffx.31215.1.S1_at CA618463 - - 1e-3 At4g02940 oxidoreductase, 2OG-Fe(II) oxygenase family protein C.G. S.X.
0.02 6e-2 38 Vitis vinifera 1621840_at CB036000 - - 4e-7 At1g64890 integral membrane transporter family protein C.G. S.X.
0.03 4e-1 36 Zea mays Zm.2653.1.A1_at BM073552 - - 7e+0 At4g37409 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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