CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g02910

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g02910 828141 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.98 97.8 At1g23910 839002 - F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P S.X. H.G.
0.96 97.3 At4g16930 827401 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P S.X. H.G.
0.96 97.3 At5g17950 831662 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.94 96.7 At1g33000 840195 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.93 96.4 At2g25990 817140 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown S.X. H.G.
0.92 96.0 At1g65170 842824 ubiquitin carboxyl-terminal hydrolase family protein F:ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;PMO S.X. H.G.
0.92 96.0 At1g23610 838971 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.92 96.0 At2g37610 818338 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.90 95.1 At3g28120 822436 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
355.5 100.0 E-MEXP-509-raw-cel-829148561
303.6 100.0 E-MEXP-509-raw-cel-829148525
285.5 100.0 E-MEXP-509-raw-cel-829148348
262.5 100.0 E-MEXP-509-raw-cel-829148456
234.9 100.0 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
212.4 100.0 E-MEXP-509-raw-cel-829148420
211.6 100.0 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
182.8 100.0 E-MEXP-509-raw-cel-829148597
182.1 100.0 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
167.1 100.0 E-MEXP-509-raw-cel-829148201
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 7e-1 34 At5g05680 830452 nuclear pore complex protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBA C.G. S.X.
0.03 7e-1 34 At3g62780 825453 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOVFB C.G. S.X.
0.02 7e-1 34 At2g37440 818321 endonuclease/exonuclease/phosphatase family protein F:hydrolase activity, inositol or phosphatidylinositol phosphatase activity;P:biological_process unknown;C:unknown;MPFO C.G. S.X.
0.02 3e+0 32 At5g63730 836493 IBR domain-containing protein F:protein binding, zinc ion binding;P:biological_process unknown;C:intracellular;MOPF C.G. S.X.
0.02 3e+0 32 At4g22590 828355 trehalose-6-phosphate phosphatase, putative F:catalytic activity, trehalose-phosphatase activity;P:trehalose biosynthetic process, metabolic process;C:chloroplast;BPMOFA C.G. S.X.
0.01 3e+0 32 At2g36370 818210 ubiquitin-protein ligase F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:unknown;MPFOBV C.G. S.X.
0.03 3e+0 32 At2g20920 816626 unknown protein F:unknown;P:unknown;C:membrane;BPO C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e+0 34 Glycine max GmaAffx.13242.1.S1_at BG044486 MYB transcription factor MYB165 - 3e-1 At2g03830 unknown protein C.G. S.X.
0.03 4e-1 34 Hordeum vulgare Contig21281_at Contig21281 - - 3e-1 At3g49570 LSU3 (RESPONSE TO LOW SULFUR 3) C.G. S.X.
0.04 1e+0 34 Oryza sativa OsAffx.12939.1.S1_at - - - 0 C.G. S.X.
0.05 1e+0 34 Populus trichocarpa PtpAffx.106329.1.A1_at DN486877 - - 8e-1 At4g02910 unknown protein C.G. S.X.
0.05 1e+1 30 Triticum aestivum TaAffx.4735.1.S1_at CA733370 - - 1e+0 At2g41233 unknown protein C.G. S.X.
0.04 2e-1 34 Vitis vinifera 1612136_at CF514670 - - 3e-17 At5g55850 NOI C.G. S.X.
0.04 8e-2 36 Zea mays Zm.9996.1.A1_at BM350937 hypothetical protein LOC100273898 - 3e-1 At4g02910 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage