CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g02710

Gene name kinase interacting family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.50 65.3 At4g02710 828199 kinase interacting family protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOBFPAV S.X. H.G.
0.90 95.1 At5g06670 830555 ATP binding / microtubule motor F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex, chloroplast;MOFBPAV S.X. H.G.
0.83 91.4 At2g04750 815018 fimbrin-like protein, putative F:molecular_function unknown;P:biological_process unknown;C:cell wall;MOFP S.X. H.G.
0.81 90.4 At5g07880 830681 SNAP29 member of mammalian SNAP25 Gene Family, a type of SNARE proteins with two chains. There are three members in Arabidopsis: SNAP30, SNAP29, and SNAP33. S.X. H.G.
0.79 89.1 At1g31530 840043 endonuclease/exonuclease/phosphatase family protein F:hydrolase activity;P:unknown;C:cellular_component unknown;MFPO S.X. H.G.
0.77 88.0 At5g62120 836332 ARR23 (ARABIDOPSIS RESPONSE REGULATOR 23) member of Response Regulator: B- Type S.X. H.G.
0.74 86.1 At2g20290 816548 XIG member of Myosin-like proteins S.X. H.G.
0.72 84.8 At2g34890 818054 CTP synthase, putative / UTP--ammonia ligase, putative F:CTP synthase activity, catalytic activity;P:pyrimidine ribonucleotide metabolic process, pyrimidine nucleotide biosynthetic process;C:endomembrane system;OBMFAP S.X. H.G.
0.72 84.8 At4g21080 827855 Dof-type zinc finger domain-containing protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PO S.X. H.G.
0.72 84.8 At2g44250 819033 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
848.8 100.0 GSM311291 Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
775.0 100.0 GSM311292 Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
340.1 100.0 GSM284392 Arabidopsis GCE1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
256.6 100.0 GSM284394 Arabidopsis GCE3 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
161.9 99.9 GSM284393 Arabidopsis GCE2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
144.8 99.9 GSM284396 Arabidopsis GPSc2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
124.0 99.9 GSM311282 Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
118.7 99.9 GSM311281 Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
96.5 99.9 GSM284395 Arabidopsis GPSc1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
64.0 99.8 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.34 3e-54 214 At1g03080 838350 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOBFPAV C.G. S.X.
0.05 5e-22 107 At3g22790 821850 kinase interacting family protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOBFPAV C.G. S.X.
0.02 1e-7 59 At2g30500 817600 kinase interacting family protein F:unknown;P:unknown;C:unknown;MOBFPAV C.G. S.X.
0.01 2e-3 46 At4g14760 827131 - F:unknown;P:unknown;C:nucleus;MOBFPAV C.G. S.X.
0.02 2e-3 46 At2g22560 816788 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOBFPAV C.G. S.X.
0.02 1e-1 40 At5g58320 835944 kinase interacting protein-related F:unknown;P:biological_process unknown;C:unknown;MOBFPAV C.G. S.X.
0.01 4e-1 38 At5g64230 836544 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PM C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 6e-1 38 Glycine max GmaAffx.38948.1.S1_at AW102496 - - 3e-1 At3g53490 unknown protein C.G. S.X.
0.01 3e+0 34 Hordeum vulgare Contig5198_s_at Contig5198 - - 5e+0 At4g02130 GATL6 C.G. S.X.
0.03 9e-4 48 Oryza sativa Os10g0422000 AK063303.1 - Hypothetical protein 9e-4 At4g02710 kinase interacting family protein C.G. S.X.
0.09 4e-11 71 Populus trichocarpa PtpAffx.28135.1.S1_at CK096581 - - 9e-12 At4g02710 kinase interacting family protein C.G. S.X.
0.01 2e+0 36 Triticum aestivum TaAffx.81778.1.S1_at CA682071 - - 1e-3 At2g30500 kinase interacting family protein C.G. S.X.
0.01 2e+0 34 Vitis vinifera 1617249_at CB340566 hypothetical protein LOC100253968 - 6e-6 At4g25050 ACP4 (acyl carrier protein 4) C.G. S.X.
0.01 3e+0 34 Zea mays Zm.5416.1.A1_at AI491453 hypothetical protein LOC100279267 - 5e-1 At4g18975 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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